From 24983e71b161d773781e805ec25460a4ef41eb26 Mon Sep 17 00:00:00 2001
From: Jean Cochrane ", property_label, "
",
- "Address: ", property_address,
- "
PIN: ", link_pin(meta_pin),
- "
Property class: ", char_class,
- "
Assessor neighborhood: ", meta_nbhd_code,
- "
Year built: ", char_yrblt,
- "
", bldg_sf_var_name, ": ", bldg_sf,
- "
Land S.F.: ", land_sf,
- "
Beds: ", char_beds,
- "
Full baths: ", char_fbath,
- "
Half baths: ", char_hbath
- )
- }
- ) %>%
- # Add circle markers for the comps
- addCircleMarkers(
- data = comp_df,
- ~loc_longitude,
- ~loc_latitude,
- opacity = ~ ifelse(
- # Hide the marker if the comp has the same PIN as its target, since
- # we want to retain the marker styles of the target but override
- # the label
- is_subject_pin_sale,
- 0,
- 1
- ),
- fillOpacity = ~ ifelse(
- is_subject_pin_sale,
- 0,
- 1
- ),
- radius = 4,
- color = comp_color,
- label = ~ ifelse(
- is_subject_pin_sale,
- # It would be nice to introduce a line break here, but it doesn't
- # seem like the R leaflet package accepts HTML or exposes an interface
- # for advanced label formatting
- glue::glue("{property_label} [{sale_price_short} ({sale_date})]"),
- glue::glue("{sale_price_short} ({sale_date})")
- ),
- labelOptions = labelOptions(
- noHide = TRUE,
- textsize = "12px",
- direction = "top",
- opacity = 0.9,
- offset = c(0, -4)
- ),
- popup = ~ paste0(
- "",
- ifelse(
- is_subject_pin_sale,
- property_label,
- paste0("Comp ", comp_num)
- ),
- "
",
- "Address: ", property_address,
- "
PIN: ", link_pin(comp_pin),
- "
Property class: ", char_class,
- "
Assessor neighborhood: ", meta_nbhd_code,
- "
Sale price: ", sale_price,
- "
Sale $/sqft: ", sale_price_per_sq_ft,
- "
Sale date: ", sale_date,
- "
Sale doc. num.: ", comp_document_num,
- "
Year built: ", char_yrblt,
- "
",
- ifelse(is_subject_pin_sale, bldg_sf_var_name, "Bldg. S.F."),
- ": ", bldg_sf,
- "
Land S.F.: ", land_sf,
- "
Beds: ", char_beds,
- "
Full baths: ", char_fbath,
- "
Half baths: ", char_hbath
- )
- ) %>%
- addLegend(
- "bottomright",
- labels = legend_labels,
- colors = legend_colors,
- opacity = 1
- ) %>%
- addControl(
- "topright",
- html = "Tap or click on a dot for more details"
- ) %>%
- fitBounds(
- # Compute the bounds for the map based on the extent of the markers
- lng1 = min(assessment_df$loc_longitude, comp_df$loc_longitude) - bounds_buffer,
- lat1 = min(assessment_df$loc_latitude, comp_df$loc_latitude) - bounds_buffer,
- lng2 = max(assessment_df$loc_longitude, comp_df$loc_longitude) + bounds_buffer,
- lat2 = max(assessment_df$loc_latitude, comp_df$loc_latitude) + bounds_buffer
- )
-}
-
-# Helper function for generating a string summary of the average price of
-# a dataframe of comps
-avg_price_summary <- function(df) {
- # Compute the average price and the average price per square foot
- avg_sale_price <- df$meta_sale_price %>%
- mean() %>%
- scales::dollar()
- avg_price_per_sqft <- (df$meta_sale_price / df$char_bldg_sf) %>%
- mean() %>%
- scales::dollar(accuracy = 1)
-
- # Compute the range of dates for the sales, and get a rich text HTML string
- # describing the range
- sale_years <- comp_df %>%
- mutate(sale_year = substr(meta_sale_date, 1, 4)) %>%
- arrange(sale_year) %>%
- pull(sale_year)
- sale_year_range_html <- ifelse(
- length(unique(sale_years)) > 1,
- glue::glue("between {sale_years[1]} and {sale_years[length(sale_years)]}"),
- glue::glue("in {sale_years[1]}")
- )
-
- return(
- HTML(
- paste0(
- "The top 5 comparable sales took place ", sale_year_range_html, ". ",
- "The average price of these sales was ",
- "", avg_sale_price, "",
- " at ",
- "", avg_price_per_sqft, "/sq.ft.",
- "
", - "Based on these and other sales, the model that ran on ", - format(metadata_df$final_model_run_date, "%B %d, %Y"), - " initially estimated that the value of this ", - ifelse(parcel_is_multicard, "card", "property"), - " as of lien date ", - "January 1, ", format(metadata_df$final_model_run_date, "%Y"), "", - " should be ", - "", pred_fmv %>% scales::dollar(), "", - " at ", - "", pred_fmv_per_sqft %>% scales::dollar(accuracy = 1), "/sq.ft.", - "
" - ) - ) - ) -} - -# Helper function to "freeze" rows in a paginated df with `rows_per_page` -# rows per page by taking `n` rows from the first page and -# copy/inserting them back into the df so they always appear as the first -# rows in the table. Useful hack for table libraries that don't allow you -# to freeze rows. -freeze_first_n_rows <- function(df, n = 2, rows_per_page = 10) { - # Grab the rows that should be frozen - frozen_rows <- df[1:n, ] - - # Initialize an empty dataframe to use for output - new_df <- data.frame() - - # Calculate the sequence of indices that we will use to insert frozen rows - df_len <- nrow(df) - insert_indices <- seq( - # Skip the first page of results - rows_per_page + 1, - df_len, - # The step length for the sequence needs to account for the frozen rows that - # we will insert - rows_per_page - n - ) - - # Construct the output dataframe by iterating the rows in the input dataframe - # and inserting the frozen rows where necessary - for (i in 1:df_len) { - if (i %in% insert_indices) { - new_df <- bind_rows(new_df, frozen_rows) - } - new_df <- bind_rows(new_df, df[i, ]) - } - - return(new_df) -} - -# Helper function for generating a table for comparing chars between the subject -# property and its comps -combined_char_table <- function(assessment_df, comp_df, parcel_is_multicard, bldg_sf_is_combined) { - # Define a list of the most important characteristics to be displayed - # first in the table - top_chars <- c( - "char_class", "meta_nbhd_code", "char_yrblt", "char_bldg_sf", - "char_land_sf", "char_beds", "char_fbath", "char_hbath" - ) - # Freeze this many of the top rows in the table - num_frozen_rows <- 3 - rows_per_page <- 10 - - # Set the name of the building SF var differently when it's combined - bldg_sf_var_name <- ifelse(bldg_sf_is_combined, "Combined Building S.F.", "Building Square Feet") - - return( - assessment_df %>% - mutate( - comp_num = "0", - meta_sale_document_num = "", - meta_sale_date = "", - meta_sale_price = "", - meta_sale_price_per_sq_ft = "", - ) %>% - select( - # If you change any chars in this list, make sure to double-check - # the top_chars vector and add or remove chars as necessary so that - # we don't accidentally add them via all_predictors - comp_num, - "Sale Price" = meta_sale_price, - "Sale $/sqft" = meta_sale_price_per_sq_ft, - "Sale Date" = meta_sale_date, - "Sale Doc. Num." = meta_sale_document_num, - "Address" = property_address, - "PIN" = pretty_pin, - "Assessor Neighborhood" = meta_nbhd_code, - all_of(top_chars), - all_of(unlist(metadata_df$all_predictors) %>% setdiff(top_chars)) - ) %>% - bind_rows( - comp_df %>% - # Add a marker to the comp number if it is a prior sale of the subject - # card - mutate( - comp_num = as.character(comp_num), - comp_num = ifelse( - is_subject_pin_sale, - paste0(comp_num, "*"), - comp_num - ) - ) %>% - select( - comp_num, - "Sale Price" = sale_price, - "Sale $/sqft" = sale_price_per_sq_ft, - "Sale Date" = sale_date, - "Sale Doc. Num." = comp_document_num, - "Address" = property_address, - "PIN" = pretty_pin, - "Assessor Neighborhood" = meta_nbhd_code, - all_of(top_chars), - all_of(unlist(metadata_df$all_predictors) %>% setdiff(top_chars)) - ) - ) %>% - # Truncate numeric values in the data to two decimal places - mutate(across(where(is.numeric), ~ round(., 2))) %>% - # Format numeric columns with commas but no decimals - mutate( - across( - c( - "char_bldg_sf", "char_land_sf", "time_sale_day", - # Exclude number of foreclosures, which needs a decimal - starts_with("prox_num") & !matches("prox_num_foreclosure_per_1000_pin_past_5_years"), - ends_with("dist_ft") - ), - scales::label_comma(accuracy = 1) - ), - ) %>% - # Format numeric columns with commas _and_ decimals - mutate(prox_num_foreclosure_per_1000_pin_past_5_years = scales::comma(prox_num_foreclosure_per_1000_pin_past_5_years, accuracy = 0.01)) %>% - # Format currency columns - mutate( - across( - c( - "acs5_median_household_renter_occupied_gross_rent", - starts_with("acs5_median_income") - ), - scales::label_dollar() - ) - ) %>% - # Format percent columns - mutate(across(starts_with("acs5_percent"), scales::label_percent())) %>% - # This percent column is already multiplied by 100, it just needs a - # percent sign - mutate(other_tax_bill_rate = paste0(other_tax_bill_rate, "%")) %>% - # Rename characteristic columns to their pretty format - ccao::vars_rename(names_from = "model", names_to = "pretty") %>% - rename("Number of Days Since First Recorded Sale" = "Sale Day") %>% - rename(!!bldg_sf_var_name := "Building Square Feet") %>% - # Pivot the dataframe longer so that we can use pagination to navigate - # through multiple pages of full characteristic values. - # Start by casting all columns to char ahead of pivot, since otherwise we - # can't combine char values into one column - mutate(across(everything(), as.character)) %>% - pivot_longer( - cols = -comp_num, - names_to = "Characteristic", - values_to = "Value" - ) %>% - # Pivot back to wide so that each property has its own column representing - # all of its chars - pivot_wider( - names_from = comp_num, - values_from = Value, - names_prefix = "Comp " - ) %>% - rename_with( - ~ ifelse(parcel_is_multicard, "Subject card", "Subject prop."), - matches("Comp 0") - ) %>% - # Freeze the price char rows so that they are always visible in the table - # even when viewing different pages - freeze_first_n_rows(n = num_frozen_rows, rows_per_page = rows_per_page) %>% - # Render a paginated table with results - reactable( - pagination = TRUE, - defaultPageSize = rows_per_page, - # Turn off sorting to retain the "frozen" price char rows - sortable = FALSE, - searchable = TRUE, - columns = list( - # Chars column should match the weight of the header row, to - # emphasize that it's acting like a header - Characteristic = colDef(style = list(fontWeight = 600)) - ), - rowStyle = function(index) { - # Style the frozen rows with a grey background and a harder bottom - # border to visually indicate that they are frozen - styles <- list() - if (index %% 10 %in% 1:num_frozen_rows) { - styles <- c(styles, background = "rgba(0, 0, 0, 0.05)") - } - if (index %% 10 == num_frozen_rows) { - styles <- c(styles, "border-bottom" = "1px solid rgb(182, 182, 182)") - } - return(styles) - }, - class = "cell-border stripe", - highlight = TRUE, - bordered = TRUE, - defaultColDef = colDef(align = "center") - ) - ) -} - -subject_pin_sale_warning <- function(comp_df, parcel_is_multicard) { - if (any(comp_df$is_subject_pin_sale)) { - return( - HTML( - paste0( - "* This comparable is a sale of the subject ", - ifelse(parcel_is_multicard, "card", "property"), ". ", - "The model typically weights these sales highly, even if they ", - "are older than other comparable sales." - ) - ) - ) - } -} - -if (parcel_is_pre_2025_or_large_multicard) { - # In case of a large (>3) multicard PIN, or a multi-card PIN valued before we - # changed our small (2-3) multicard handling in 2025, split the report out - # into tabsets, with one tabset for each card. We have to do this in raw - # Bootstrap because Quarto tabsets aren't supported by htmltools::tagList, - # and we need tagList in order to render the Leaflet map, which can't - # otherwise be rendered in the context of a `for` loop. - - # This list will store the nav elements that control the tab contents - nav_tabs <- list() - # This list will store the tab contents - tab_contents <- list() - - # Order cards so that they appear in ascending order in the report - card_nums <- assessment_df %>% - arrange(as.integer(meta_card_num)) %>% - pull(meta_card_num) - - for (card_num in card_nums) { - # Filter the df for just the row representing the card at hand - assessment_card_df <- assessment_df %>% filter(meta_card_num == card_num) - # Filter for only this card's comps - comp_card_df <- comp_df %>% filter(card == card_num) - - nav_tabs <- c( - nav_tabs, - withTags( - list( - li( - class = "nav-item", - role = "presentation", - a( - # Activate the first card's tab pane by default - class = ifelse(card_num == 1, "nav-link active", "nav-link"), - id = glue::glue("tabset-1-{card_num}-tab"), - "data-bs-toggle" = "tab", - "data-bs-target" = glue::glue("#tabset-1-{card_num}"), - role = "tab", - "aria-controls" = glue::glue("tabset-1-{card_num}"), - "aria-selected" = ifelse(card_num == 1, "true", "false"), - href = "", - paste0("Card ", card_num) - ) - ) - ) - ) - ) - - tab_contents <- c( - tab_contents, - withTags( - list( - div( - id = glue::glue("tabset-1-{card_num}"), - class = ifelse(card_num == 1, "tab-pane active", "tab-pane"), - role = "tabpanel", - "aria-labelledby" = glue::glue("tabset-1-{card_num}-tab"), - html_tags_for_report( - assessment_card_df, - comp_card_df, - parcel_is_multicard = TRUE, - bldg_sf_is_combined = FALSE - ) - ) - ) - ) - ) - } - - html_tags <- withTags( - list( - div( - class = "panel-tabset", - ul( - class = "nav nav-tabs", - role = "tablist", - nav_tabs - ), - div( - class = "tab-content", - tab_contents - ) - ) - ) - ) -} else if (parcel_is_post_2025_small_multicard) { - # Handle small (2-3) multicard PINs slightly differently if they were valued - # during or after 2025, to account for the way we changed small multicard - # valuation in that year to use the largest card in the PIN with a composite - # building square footage. - assessment_frankencard_df <- assessment_df %>% - arrange(desc(char_bldg_sf), meta_card_num) %>% - mutate(char_bldg_sf = sum(char_bldg_sf)) %>% - first() - - comp_frankencard_df <- comp_df %>% - filter(card == pull(assessment_frankencard_df, meta_card_num)) - - html_tags <- html_tags_for_report( - assessment_frankencard_df, - comp_frankencard_df, - parcel_is_multicard = FALSE, - bldg_sf_is_combined = TRUE - ) -} else { - # For single-card PINs, skip the tablist - html_tags <- html_tags_for_report( - assessment_df, - comp_df, - parcel_is_multicard = FALSE, - bldg_sf_is_combined = FALSE - ) -} - -# Render the list of HTML tags -tagList(html_tags) -``` - -## Final model estimate - -After rounding and other processing, the model's final estimate for the value of this property on lien date **January 1st, `r format(metadata_df$final_model_run_date, "%Y")`** was **`r scales::dollar(metadata_df$pred_pin_final_fmv_round)`**. - -The model's estimated value for this property is not necessarily the final valuation during a reassessment. Analysts at the Assessor's Office can review the model's estimate and make adjustments. To see this property's most recent valuation, visit the `r link_pin(params$pin, "Assessor's website")`. diff --git a/renv.lock b/renv.lock deleted file mode 100644 index 4a082643..00000000 --- a/renv.lock +++ /dev/null @@ -1,1211 +0,0 @@ -{ - "R": { - "Version": "4.4.1", - "Repositories": [ - { - "Name": "CRAN", - "URL": "https://cloud.r-project.org" - } - ] - }, - "Packages": { - "DBI": { - "Package": "DBI", - "Version": "1.2.3", - "Source": "Repository", - "Repository": "CRAN", - "Requirements": [ - "R", - "methods" - ], - "Hash": "065ae649b05f1ff66bb0c793107508f5" - }, - "R6": { - "Package": "R6", - "Version": "2.5.1", - "Source": "Repository", - "Repository": "CRAN", - "Requirements": [ - "R" - ], - "Hash": "470851b6d5d0ac559e9d01bb352b4021" - }, - "RColorBrewer": { - "Package": "RColorBrewer", - "Version": "1.1-3", - "Source": "Repository", - "Repository": "CRAN", - "Requirements": [ - "R" - ], - "Hash": "45f0398006e83a5b10b72a90663d8d8c" - }, - "Rcpp": { - "Package": "Rcpp", - "Version": "1.0.12", - 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start <- Sys.time() - profile <- tempfile("renv-startup-", fileext = ".Rprof") - utils::Rprof(profile) - on.exit({ - utils::Rprof(NULL) - elapsed <- signif(difftime(Sys.time(), start, units = "auto"), digits = 2L) - writeLines(sprintf("- renv took %s to run the autoloader.", format(elapsed))) - writeLines(sprintf("- Profile: %s", profile)) - print(utils::summaryRprof(profile)) - }, add = TRUE) - } - - # figure out whether the autoloader is enabled - enabled <- local({ - - # first, check config option - override <- getOption("renv.config.autoloader.enabled") - if (!is.null(override)) - return(override) - - # if we're being run in a context where R_LIBS is already set, - # don't load -- presumably we're being run as a sub-process and - # the parent process has already set up library paths for us - rcmd <- Sys.getenv("R_CMD", unset = NA) - rlibs <- Sys.getenv("R_LIBS", unset = NA) - if (!is.na(rlibs) && !is.na(rcmd)) - return(FALSE) - - # next, check environment variables - # TODO: prefer using the configuration one in the future - envvars <- c( - "RENV_CONFIG_AUTOLOADER_ENABLED", - "RENV_AUTOLOADER_ENABLED", - "RENV_ACTIVATE_PROJECT" - ) - - for (envvar in envvars) { - envval <- Sys.getenv(envvar, unset = NA) - if (!is.na(envval)) - return(tolower(envval) %in% c("true", "t", "1")) - } - - # enable by default - TRUE - - }) - - # bail if we're not enabled - if (!enabled) { - - # if we're not enabled, we might still need to manually load - # the user profile here - profile <- Sys.getenv("R_PROFILE_USER", unset = "~/.Rprofile") - if (file.exists(profile)) { - cfg <- Sys.getenv("RENV_CONFIG_USER_PROFILE", unset = "TRUE") - if (tolower(cfg) %in% c("true", "t", "1")) - sys.source(profile, envir = globalenv()) - } - - return(FALSE) - - } - - # avoid recursion - if (identical(getOption("renv.autoloader.running"), TRUE)) { - warning("ignoring recursive attempt to run renv autoloader") - return(invisible(TRUE)) - } - - # signal that we're loading renv during R startup - options(renv.autoloader.running = TRUE) - on.exit(options(renv.autoloader.running = NULL), add = TRUE) - - # signal that we've consented to use renv - options(renv.consent = TRUE) - - # load the 'utils' package eagerly -- this ensures that renv shims, which - # mask 'utils' packages, will come first on the search path - library(utils, lib.loc = .Library) - - # unload renv if it's already been loaded - if ("renv" %in% loadedNamespaces()) - unloadNamespace("renv") - - # load bootstrap tools - `%||%` <- function(x, y) { - if (is.null(x)) y else x - } - - catf <- function(fmt, ..., appendLF = TRUE) { - - quiet <- getOption("renv.bootstrap.quiet", default = FALSE) - if (quiet) - return(invisible()) - - msg <- sprintf(fmt, ...) - cat(msg, file = stdout(), sep = if (appendLF) "\n" else "") - - invisible(msg) - - } - - header <- function(label, - ..., - prefix = "#", - suffix = "-", - n = min(getOption("width"), 78)) - { - label <- sprintf(label, ...) - n <- max(n - nchar(label) - nchar(prefix) - 2L, 8L) - if (n <= 0) - return(paste(prefix, label)) - - tail <- paste(rep.int(suffix, n), collapse = "") - paste0(prefix, " ", label, " ", tail) - - } - - heredoc <- function(text, leave = 0) { - - # remove leading, trailing whitespace - trimmed <- gsub("^\\s*\\n|\\n\\s*$", "", text) - - # split into lines - lines <- strsplit(trimmed, "\n", fixed = TRUE)[[1L]] - - # compute common indent - indent <- regexpr("[^[:space:]]", lines) - common <- min(setdiff(indent, -1L)) - leave - paste(substring(lines, common), collapse = "\n") - - } - - startswith <- function(string, prefix) { - substring(string, 1, nchar(prefix)) == prefix - } - - bootstrap <- function(version, library) { - - friendly <- renv_bootstrap_version_friendly(version) - section <- header(sprintf("Bootstrapping renv %s", friendly)) - catf(section) - - # attempt to download renv - catf("- Downloading renv ... ", appendLF = FALSE) - withCallingHandlers( - tarball <- renv_bootstrap_download(version), - error = function(err) { - catf("FAILED") - stop("failed to download:\n", conditionMessage(err)) - } - ) - catf("OK") - on.exit(unlink(tarball), add = TRUE) - - # now attempt to install - catf("- Installing renv ... ", appendLF = FALSE) - withCallingHandlers( - status <- renv_bootstrap_install(version, tarball, library), - error = function(err) { - catf("FAILED") - stop("failed to install:\n", conditionMessage(err)) - } - ) - catf("OK") - - # add empty line to break up bootstrapping from normal output - catf("") - - return(invisible()) - } - - renv_bootstrap_tests_running <- function() { - getOption("renv.tests.running", default = FALSE) - } - - renv_bootstrap_repos <- function() { - - # get CRAN repository - cran <- getOption("renv.repos.cran", "https://cloud.r-project.org") - - # check for repos override - repos <- Sys.getenv("RENV_CONFIG_REPOS_OVERRIDE", unset = NA) - if (!is.na(repos)) { - - # check for RSPM; if set, use a fallback repository for renv - rspm <- Sys.getenv("RSPM", unset = NA) - if (identical(rspm, repos)) - repos <- c(RSPM = rspm, CRAN = cran) - - return(repos) - - } - - # check for lockfile repositories - repos <- tryCatch(renv_bootstrap_repos_lockfile(), error = identity) - if (!inherits(repos, "error") && length(repos)) - return(repos) - - # retrieve current repos - repos <- getOption("repos") - - # ensure @CRAN@ entries are resolved - repos[repos == "@CRAN@"] <- cran - - # add in renv.bootstrap.repos if set - default <- c(FALLBACK = "https://cloud.r-project.org") - extra <- getOption("renv.bootstrap.repos", default = default) - repos <- c(repos, extra) - - # remove duplicates that might've snuck in - dupes <- duplicated(repos) | duplicated(names(repos)) - repos[!dupes] - - } - - renv_bootstrap_repos_lockfile <- function() { - - lockpath <- Sys.getenv("RENV_PATHS_LOCKFILE", unset = "renv.lock") - if (!file.exists(lockpath)) - return(NULL) - - lockfile <- tryCatch(renv_json_read(lockpath), error = identity) - if (inherits(lockfile, "error")) { - warning(lockfile) - return(NULL) - } - - repos <- lockfile$R$Repositories - if (length(repos) == 0) - return(NULL) - - keys <- vapply(repos, `[[`, "Name", FUN.VALUE = character(1)) - vals <- vapply(repos, `[[`, "URL", FUN.VALUE = character(1)) - names(vals) <- keys - - return(vals) - - } - - renv_bootstrap_download <- function(version) { - - sha <- attr(version, "sha", exact = TRUE) - - methods <- if (!is.null(sha)) { - - # attempting to bootstrap a development version of renv - c( - function() renv_bootstrap_download_tarball(sha), - function() renv_bootstrap_download_github(sha) - ) - - } else { - - # attempting to bootstrap a release version of renv - c( - function() renv_bootstrap_download_tarball(version), - function() renv_bootstrap_download_cran_latest(version), - function() renv_bootstrap_download_cran_archive(version) - ) - - } - - for (method in methods) { - path <- tryCatch(method(), error = identity) - if (is.character(path) && file.exists(path)) - return(path) - } - - stop("All download methods failed") - - } - - renv_bootstrap_download_impl <- function(url, destfile) { - - mode <- "wb" - - # https://bugs.r-project.org/bugzilla/show_bug.cgi?id=17715 - fixup <- - Sys.info()[["sysname"]] == "Windows" && - substring(url, 1L, 5L) == "file:" - - if (fixup) - mode <- "w+b" - - args <- list( - url = url, - destfile = destfile, - mode = mode, - quiet = TRUE - ) - - if ("headers" %in% names(formals(utils::download.file))) - args$headers <- renv_bootstrap_download_custom_headers(url) - - do.call(utils::download.file, args) - - } - - renv_bootstrap_download_custom_headers <- function(url) { - - headers <- getOption("renv.download.headers") - if (is.null(headers)) - return(character()) - - if (!is.function(headers)) - stopf("'renv.download.headers' is not a function") - - headers <- headers(url) - if (length(headers) == 0L) - return(character()) - - if (is.list(headers)) - headers <- unlist(headers, recursive = FALSE, use.names = TRUE) - - ok <- - is.character(headers) && - is.character(names(headers)) && - all(nzchar(names(headers))) - - if (!ok) - stop("invocation of 'renv.download.headers' did not return a named character vector") - - headers - - } - - renv_bootstrap_download_cran_latest <- function(version) { - - spec <- renv_bootstrap_download_cran_latest_find(version) - type <- spec$type - repos <- spec$repos - - baseurl <- utils::contrib.url(repos = repos, type = type) - ext <- if (identical(type, "source")) - ".tar.gz" - else if (Sys.info()[["sysname"]] == "Windows") - ".zip" - else - ".tgz" - name <- sprintf("renv_%s%s", version, ext) - url <- paste(baseurl, name, sep = "/") - - destfile <- file.path(tempdir(), name) - status <- tryCatch( - renv_bootstrap_download_impl(url, destfile), - condition = identity - ) - - if (inherits(status, "condition")) - return(FALSE) - - # report success and return - destfile - - } - - renv_bootstrap_download_cran_latest_find <- function(version) { - - # check whether binaries are supported on this system - binary <- - getOption("renv.bootstrap.binary", default = TRUE) && - !identical(.Platform$pkgType, "source") && - !identical(getOption("pkgType"), "source") && - Sys.info()[["sysname"]] %in% c("Darwin", "Windows") - - types <- c(if (binary) "binary", "source") - - # iterate over types + repositories - for (type in types) { - for (repos in renv_bootstrap_repos()) { - - # retrieve package database - db <- tryCatch( - as.data.frame( - utils::available.packages(type = type, repos = repos), - stringsAsFactors = FALSE - ), - error = identity - ) - - if (inherits(db, "error")) - next - - # check for compatible entry - entry <- db[db$Package %in% "renv" & db$Version %in% version, ] - if (nrow(entry) == 0) - next - - # found it; return spec to caller - spec <- list(entry = entry, type = type, repos = repos) - return(spec) - - } - } - - # if we got here, we failed to find renv - fmt <- "renv %s is not available from your declared package repositories" - stop(sprintf(fmt, version)) - - } - - renv_bootstrap_download_cran_archive <- function(version) { - - name <- sprintf("renv_%s.tar.gz", version) - repos <- renv_bootstrap_repos() - urls <- file.path(repos, "src/contrib/Archive/renv", name) - destfile <- file.path(tempdir(), name) - - for (url in urls) { - - status <- tryCatch( - renv_bootstrap_download_impl(url, destfile), - condition = identity - ) - - if (identical(status, 0L)) - return(destfile) - - } - - return(FALSE) - - } - - renv_bootstrap_download_tarball <- function(version) { - - # if the user has provided the path to a tarball via - # an environment variable, then use it - tarball <- Sys.getenv("RENV_BOOTSTRAP_TARBALL", unset = NA) - if (is.na(tarball)) - return() - - # allow directories - if (dir.exists(tarball)) { - name <- sprintf("renv_%s.tar.gz", version) - tarball <- file.path(tarball, name) - } - - # bail if it doesn't exist - if (!file.exists(tarball)) { - - # let the user know we weren't able to honour their request - fmt <- "- RENV_BOOTSTRAP_TARBALL is set (%s) but does not exist." - msg <- sprintf(fmt, tarball) - warning(msg) - - # bail - return() - - } - - catf("- Using local tarball '%s'.", tarball) - tarball - - } - - renv_bootstrap_download_github <- function(version) { - - enabled <- Sys.getenv("RENV_BOOTSTRAP_FROM_GITHUB", unset = "TRUE") - if (!identical(enabled, "TRUE")) - return(FALSE) - - # prepare download options - pat <- Sys.getenv("GITHUB_PAT") - if (nzchar(Sys.which("curl")) && nzchar(pat)) { - fmt <- "--location --fail --header \"Authorization: token %s\"" - extra <- sprintf(fmt, pat) - saved <- options("download.file.method", "download.file.extra") - options(download.file.method = "curl", download.file.extra = extra) - on.exit(do.call(base::options, saved), add = TRUE) - } else if (nzchar(Sys.which("wget")) && nzchar(pat)) { - fmt <- "--header=\"Authorization: token %s\"" - extra <- sprintf(fmt, pat) - saved <- options("download.file.method", "download.file.extra") - options(download.file.method = "wget", download.file.extra = extra) - on.exit(do.call(base::options, saved), add = TRUE) - } - - url <- file.path("https://api.github.com/repos/rstudio/renv/tarball", version) - name <- sprintf("renv_%s.tar.gz", version) - destfile <- file.path(tempdir(), name) - - status <- tryCatch( - renv_bootstrap_download_impl(url, destfile), - condition = identity - ) - - if (!identical(status, 0L)) - return(FALSE) - - renv_bootstrap_download_augment(destfile) - - return(destfile) - - } - - # Add Sha to DESCRIPTION. This is stop gap until #890, after which we - # can use renv::install() to fully capture metadata. - renv_bootstrap_download_augment <- function(destfile) { - sha <- renv_bootstrap_git_extract_sha1_tar(destfile) - if (is.null(sha)) { - return() - } - - # Untar - tempdir <- tempfile("renv-github-") - on.exit(unlink(tempdir, recursive = TRUE), add = TRUE) - untar(destfile, exdir = tempdir) - pkgdir <- dir(tempdir, full.names = TRUE)[[1]] - - # Modify description - desc_path <- file.path(pkgdir, "DESCRIPTION") - desc_lines <- readLines(desc_path) - remotes_fields <- c( - "RemoteType: github", - "RemoteHost: api.github.com", - "RemoteRepo: renv", - "RemoteUsername: rstudio", - "RemotePkgRef: rstudio/renv", - paste("RemoteRef: ", sha), - paste("RemoteSha: ", sha) - ) - writeLines(c(desc_lines[desc_lines != ""], remotes_fields), con = desc_path) - - # Re-tar - local({ - old <- setwd(tempdir) - on.exit(setwd(old), add = TRUE) - - tar(destfile, compression = "gzip") - }) - invisible() - } - - # Extract the commit hash from a git archive. Git archives include the SHA1 - # hash as the comment field of the tarball pax extended header - # (see https://www.kernel.org/pub/software/scm/git/docs/git-archive.html) - # For GitHub archives this should be the first header after the default one - # (512 byte) header. - renv_bootstrap_git_extract_sha1_tar <- function(bundle) { - - # open the bundle for reading - # We use gzcon for everything because (from ?gzcon) - # > Reading from a connection which does not supply a 'gzip' magic - # > header is equivalent to reading from the original connection - conn <- gzcon(file(bundle, open = "rb", raw = TRUE)) - on.exit(close(conn)) - - # The default pax header is 512 bytes long and the first pax extended header - # with the comment should be 51 bytes long - # `52 comment=` (11 chars) + 40 byte SHA1 hash - len <- 0x200 + 0x33 - res <- rawToChar(readBin(conn, "raw", n = len)[0x201:len]) - - if (grepl("^52 comment=", res)) { - sub("52 comment=", "", res) - } else { - NULL - } - } - - renv_bootstrap_install <- function(version, tarball, library) { - - # attempt to install it into project library - dir.create(library, showWarnings = FALSE, recursive = TRUE) - output <- renv_bootstrap_install_impl(library, tarball) - - # check for successful install - status <- attr(output, "status") - if (is.null(status) || identical(status, 0L)) - return(status) - - # an error occurred; report it - header <- "installation of renv failed" - lines <- paste(rep.int("=", nchar(header)), collapse = "") - text <- paste(c(header, lines, output), collapse = "\n") - stop(text) - - } - - renv_bootstrap_install_impl <- function(library, tarball) { - - # invoke using system2 so we can capture and report output - bin <- R.home("bin") - exe <- if (Sys.info()[["sysname"]] == "Windows") "R.exe" else "R" - R <- file.path(bin, exe) - - args <- c( - "--vanilla", "CMD", "INSTALL", "--no-multiarch", - "-l", shQuote(path.expand(library)), - shQuote(path.expand(tarball)) - ) - - system2(R, args, stdout = TRUE, stderr = TRUE) - - } - - renv_bootstrap_platform_prefix <- function() { - - # construct version prefix - version <- paste(R.version$major, R.version$minor, sep = ".") - prefix <- paste("R", numeric_version(version)[1, 1:2], sep = "-") - - # include SVN revision for development versions of R - # (to avoid sharing platform-specific artefacts with released versions of R) - devel <- - identical(R.version[["status"]], "Under development (unstable)") || - identical(R.version[["nickname"]], "Unsuffered Consequences") - - if (devel) - prefix <- paste(prefix, R.version[["svn rev"]], sep = "-r") - - # build list of path components - components <- c(prefix, R.version$platform) - - # include prefix if provided by user - prefix <- renv_bootstrap_platform_prefix_impl() - if (!is.na(prefix) && nzchar(prefix)) - components <- c(prefix, components) - - # build prefix - paste(components, collapse = "/") - - } - - renv_bootstrap_platform_prefix_impl <- function() { - - # if an explicit prefix has been supplied, use it - prefix <- Sys.getenv("RENV_PATHS_PREFIX", unset = NA) - if (!is.na(prefix)) - return(prefix) - - # if the user has requested an automatic prefix, generate it - auto <- Sys.getenv("RENV_PATHS_PREFIX_AUTO", unset = NA) - if (is.na(auto) && getRversion() >= "4.4.0") - auto <- "TRUE" - - if (auto %in% c("TRUE", "True", "true", "1")) - return(renv_bootstrap_platform_prefix_auto()) - - # empty string on failure - "" - - } - - renv_bootstrap_platform_prefix_auto <- function() { - - prefix <- tryCatch(renv_bootstrap_platform_os(), error = identity) - if (inherits(prefix, "error") || prefix %in% "unknown") { - - msg <- paste( - "failed to infer current operating system", - "please file a bug report at https://github.com/rstudio/renv/issues", - sep = "; " - ) - - warning(msg) - - } - - prefix - - } - - renv_bootstrap_platform_os <- function() { - - sysinfo <- Sys.info() - sysname <- sysinfo[["sysname"]] - - # handle Windows + macOS up front - if (sysname == "Windows") - return("windows") - else if (sysname == "Darwin") - return("macos") - - # check for os-release files - for (file in c("/etc/os-release", "/usr/lib/os-release")) - if (file.exists(file)) - return(renv_bootstrap_platform_os_via_os_release(file, sysinfo)) - - # check for redhat-release files - if (file.exists("/etc/redhat-release")) - return(renv_bootstrap_platform_os_via_redhat_release()) - - "unknown" - - } - - renv_bootstrap_platform_os_via_os_release <- function(file, sysinfo) { - - # read /etc/os-release - release <- utils::read.table( - file = file, - sep = "=", - quote = c("\"", "'"), - col.names = c("Key", "Value"), - comment.char = "#", - stringsAsFactors = FALSE - ) - - vars <- as.list(release$Value) - names(vars) <- release$Key - - # get os name - os <- tolower(sysinfo[["sysname"]]) - - # read id - id <- "unknown" - for (field in c("ID", "ID_LIKE")) { - if (field %in% names(vars) && nzchar(vars[[field]])) { - id <- vars[[field]] - break - } - } - - # read version - version <- "unknown" - for (field in c("UBUNTU_CODENAME", "VERSION_CODENAME", "VERSION_ID", "BUILD_ID")) { - if (field %in% names(vars) && nzchar(vars[[field]])) { - version <- vars[[field]] - break - } - } - - # join together - paste(c(os, id, version), collapse = "-") - - } - - renv_bootstrap_platform_os_via_redhat_release <- function() { - - # read /etc/redhat-release - contents <- readLines("/etc/redhat-release", warn = FALSE) - - # infer id - id <- if (grepl("centos", contents, ignore.case = TRUE)) - "centos" - else if (grepl("redhat", contents, ignore.case = TRUE)) - "redhat" - else - "unknown" - - # try to find a version component (very hacky) - version <- "unknown" - - parts <- strsplit(contents, "[[:space:]]")[[1L]] - for (part in parts) { - - nv <- tryCatch(numeric_version(part), error = identity) - if (inherits(nv, "error")) - next - - version <- nv[1, 1] - break - - } - - paste(c("linux", id, version), collapse = "-") - - } - - renv_bootstrap_library_root_name <- function(project) { - - # use project name as-is if requested - asis <- Sys.getenv("RENV_PATHS_LIBRARY_ROOT_ASIS", unset = "FALSE") - if (asis) - return(basename(project)) - - # otherwise, disambiguate based on project's path - id <- substring(renv_bootstrap_hash_text(project), 1L, 8L) - paste(basename(project), id, sep = "-") - - } - - renv_bootstrap_library_root <- function(project) { - - prefix <- renv_bootstrap_profile_prefix() - - path <- Sys.getenv("RENV_PATHS_LIBRARY", unset = NA) - if (!is.na(path)) - return(paste(c(path, prefix), collapse = "/")) - - path <- renv_bootstrap_library_root_impl(project) - if (!is.null(path)) { - name <- renv_bootstrap_library_root_name(project) - return(paste(c(path, prefix, name), collapse = "/")) - } - - renv_bootstrap_paths_renv("library", project = project) - - } - - renv_bootstrap_library_root_impl <- function(project) { - - root <- Sys.getenv("RENV_PATHS_LIBRARY_ROOT", unset = NA) - if (!is.na(root)) - return(root) - - type <- renv_bootstrap_project_type(project) - if (identical(type, "package")) { - userdir <- renv_bootstrap_user_dir() - return(file.path(userdir, "library")) - } - - } - - renv_bootstrap_validate_version <- function(version, description = NULL) { - - # resolve description file - # - # avoid passing lib.loc to `packageDescription()` below, since R will - # use the loaded version of the package by default anyhow. note that - # this function should only be called after 'renv' is loaded - # https://github.com/rstudio/renv/issues/1625 - description <- description %||% packageDescription("renv") - - # check whether requested version 'version' matches loaded version of renv - sha <- attr(version, "sha", exact = TRUE) - valid <- if (!is.null(sha)) - renv_bootstrap_validate_version_dev(sha, description) - else - renv_bootstrap_validate_version_release(version, description) - - if (valid) - return(TRUE) - - # the loaded version of renv doesn't match the requested version; - # give the user instructions on how to proceed - dev <- identical(description[["RemoteType"]], "github") - remote <- if (dev) - paste("rstudio/renv", description[["RemoteSha"]], sep = "@") - else - paste("renv", description[["Version"]], sep = "@") - - # display both loaded version + sha if available - friendly <- renv_bootstrap_version_friendly( - version = description[["Version"]], - sha = if (dev) description[["RemoteSha"]] - ) - - fmt <- heredoc(" - renv %1$s was loaded from project library, but this project is configured to use renv %2$s. - - Use `renv::record(\"%3$s\")` to record renv %1$s in the lockfile. - - Use `renv::restore(packages = \"renv\")` to install renv %2$s into the project library. - ") - catf(fmt, friendly, renv_bootstrap_version_friendly(version), remote) - - FALSE - - } - - renv_bootstrap_validate_version_dev <- function(version, description) { - expected <- description[["RemoteSha"]] - is.character(expected) && startswith(expected, version) - } - - renv_bootstrap_validate_version_release <- function(version, description) { - expected <- description[["Version"]] - is.character(expected) && identical(expected, version) - } - - renv_bootstrap_hash_text <- function(text) { - - hashfile <- tempfile("renv-hash-") - on.exit(unlink(hashfile), add = TRUE) - - writeLines(text, con = hashfile) - tools::md5sum(hashfile) - - } - - renv_bootstrap_load <- function(project, libpath, version) { - - # try to load renv from the project library - if (!requireNamespace("renv", lib.loc = libpath, quietly = TRUE)) - return(FALSE) - - # warn if the version of renv loaded does not match - renv_bootstrap_validate_version(version) - - # execute renv load hooks, if any - hooks <- getHook("renv::autoload") - for (hook in hooks) - if (is.function(hook)) - tryCatch(hook(), error = warnify) - - # load the project - renv::load(project) - - TRUE - - } - - renv_bootstrap_profile_load <- function(project) { - - # if RENV_PROFILE is already set, just use that - profile <- Sys.getenv("RENV_PROFILE", unset = NA) - if (!is.na(profile) && nzchar(profile)) - return(profile) - - # check for a profile file (nothing to do if it doesn't exist) - path <- renv_bootstrap_paths_renv("profile", profile = FALSE, project = project) - if (!file.exists(path)) - return(NULL) - - # read the profile, and set it if it exists - contents <- readLines(path, warn = FALSE) - if (length(contents) == 0L) - return(NULL) - - # set RENV_PROFILE - profile <- contents[[1L]] - if (!profile %in% c("", "default")) - Sys.setenv(RENV_PROFILE = profile) - - profile - - } - - renv_bootstrap_profile_prefix <- function() { - profile <- renv_bootstrap_profile_get() - if (!is.null(profile)) - return(file.path("profiles", profile, "renv")) - } - - renv_bootstrap_profile_get <- function() { - profile <- Sys.getenv("RENV_PROFILE", unset = "") - renv_bootstrap_profile_normalize(profile) - } - - renv_bootstrap_profile_set <- function(profile) { - profile <- renv_bootstrap_profile_normalize(profile) - if (is.null(profile)) - Sys.unsetenv("RENV_PROFILE") - else - Sys.setenv(RENV_PROFILE = profile) - } - - renv_bootstrap_profile_normalize <- function(profile) { - - if (is.null(profile) || profile %in% c("", "default")) - return(NULL) - - profile - - } - - renv_bootstrap_path_absolute <- function(path) { - - substr(path, 1L, 1L) %in% c("~", "/", "\\") || ( - substr(path, 1L, 1L) %in% c(letters, LETTERS) && - substr(path, 2L, 3L) %in% c(":/", ":\\") - ) - - } - - renv_bootstrap_paths_renv <- function(..., profile = TRUE, project = NULL) { - renv <- Sys.getenv("RENV_PATHS_RENV", unset = "renv") - root <- if (renv_bootstrap_path_absolute(renv)) NULL else project - prefix <- if (profile) renv_bootstrap_profile_prefix() - components <- c(root, renv, prefix, ...) - paste(components, collapse = "/") - } - - renv_bootstrap_project_type <- function(path) { - - descpath <- file.path(path, "DESCRIPTION") - if (!file.exists(descpath)) - return("unknown") - - desc <- tryCatch( - read.dcf(descpath, all = TRUE), - error = identity - ) - - if (inherits(desc, "error")) - return("unknown") - - type <- desc$Type - if (!is.null(type)) - return(tolower(type)) - - package <- desc$Package - if (!is.null(package)) - return("package") - - "unknown" - - } - - renv_bootstrap_user_dir <- function() { - dir <- renv_bootstrap_user_dir_impl() - path.expand(chartr("\\", "/", dir)) - } - - renv_bootstrap_user_dir_impl <- function() { - - # use local override if set - override <- getOption("renv.userdir.override") - if (!is.null(override)) - return(override) - - # use R_user_dir if available - tools <- asNamespace("tools") - if (is.function(tools$R_user_dir)) - return(tools$R_user_dir("renv", "cache")) - - # try using our own backfill for older versions of R - envvars <- c("R_USER_CACHE_DIR", "XDG_CACHE_HOME") - for (envvar in envvars) { - root <- Sys.getenv(envvar, unset = NA) - if (!is.na(root)) - return(file.path(root, "R/renv")) - } - - # use platform-specific default fallbacks - if (Sys.info()[["sysname"]] == "Windows") - file.path(Sys.getenv("LOCALAPPDATA"), "R/cache/R/renv") - else if (Sys.info()[["sysname"]] == "Darwin") - "~/Library/Caches/org.R-project.R/R/renv" - else - "~/.cache/R/renv" - - } - - renv_bootstrap_version_friendly <- function(version, shafmt = NULL, sha = NULL) { - sha <- sha %||% attr(version, "sha", exact = TRUE) - parts <- c(version, sprintf(shafmt %||% " [sha: %s]", substring(sha, 1L, 7L))) - paste(parts, collapse = "") - } - - renv_bootstrap_exec <- function(project, libpath, version) { - if (!renv_bootstrap_load(project, libpath, version)) - renv_bootstrap_run(version, libpath) - } - - renv_bootstrap_run <- function(version, libpath) { - - # perform bootstrap - bootstrap(version, libpath) - - # exit early if we're just testing bootstrap - if (!is.na(Sys.getenv("RENV_BOOTSTRAP_INSTALL_ONLY", unset = NA))) - return(TRUE) - - # try again to load - if (requireNamespace("renv", lib.loc = libpath, quietly = TRUE)) { - return(renv::load(project = getwd())) - } - - # failed to download or load renv; warn the user - msg <- c( - "Failed to find an renv installation: the project will not be loaded.", - "Use `renv::activate()` to re-initialize the project." - ) - - warning(paste(msg, collapse = "\n"), call. = FALSE) - - } - - renv_json_read <- function(file = NULL, text = NULL) { - - jlerr <- NULL - - # if jsonlite is loaded, use that instead - if ("jsonlite" %in% loadedNamespaces()) { - - json <- tryCatch(renv_json_read_jsonlite(file, text), error = identity) - if (!inherits(json, "error")) - return(json) - - jlerr <- json - - } - - # otherwise, fall back to the default JSON reader - json <- tryCatch(renv_json_read_default(file, text), error = identity) - if (!inherits(json, "error")) - return(json) - - # report an error - if (!is.null(jlerr)) - stop(jlerr) - else - stop(json) - - } - - renv_json_read_jsonlite <- function(file = NULL, text = NULL) { - text <- paste(text %||% readLines(file, warn = FALSE), collapse = "\n") - jsonlite::fromJSON(txt = text, simplifyVector = FALSE) - } - - renv_json_read_default <- function(file = NULL, text = NULL) { - - # find strings in the JSON - text <- paste(text %||% readLines(file, warn = FALSE), collapse = "\n") - pattern <- '["](?:(?:\\\\.)|(?:[^"\\\\]))*?["]' - locs <- gregexpr(pattern, text, perl = TRUE)[[1]] - - # if any are found, replace them with placeholders - replaced <- text - strings <- character() - replacements <- character() - - if (!identical(c(locs), -1L)) { - - # get the string values - starts <- locs - ends <- locs + attr(locs, "match.length") - 1L - strings <- substring(text, starts, ends) - - # only keep those requiring escaping - strings <- grep("[[\\]{}:]", strings, perl = TRUE, value = TRUE) - - # compute replacements - replacements <- sprintf('"\032%i\032"', seq_along(strings)) - - # replace the strings - mapply(function(string, replacement) { - replaced <<- sub(string, replacement, replaced, fixed = TRUE) - }, strings, replacements) - - } - - # transform the JSON into something the R parser understands - transformed <- replaced - transformed <- gsub("{}", "`names<-`(list(), character())", transformed, fixed = TRUE) - transformed <- gsub("[[{]", "list(", transformed, perl = TRUE) - transformed <- gsub("[]}]", ")", transformed, perl = TRUE) - transformed <- gsub(":", "=", transformed, fixed = TRUE) - text <- paste(transformed, collapse = "\n") - - # parse it - json <- parse(text = text, keep.source = FALSE, srcfile = NULL)[[1L]] - - # construct map between source strings, replaced strings - map <- as.character(parse(text = strings)) - names(map) <- as.character(parse(text = replacements)) - - # convert to list - map <- as.list(map) - - # remap strings in object - remapped <- renv_json_read_remap(json, map) - - # evaluate - eval(remapped, envir = baseenv()) - - } - - renv_json_read_remap <- function(json, map) { - - # fix names - if (!is.null(names(json))) { - lhs <- match(names(json), names(map), nomatch = 0L) - rhs <- match(names(map), names(json), nomatch = 0L) - names(json)[rhs] <- map[lhs] - } - - # fix values - if (is.character(json)) - return(map[[json]] %||% json) - - # handle true, false, null - if (is.name(json)) { - text <- as.character(json) - if (text == "true") - return(TRUE) - else if (text == "false") - return(FALSE) - else if (text == "null") - return(NULL) - } - - # recurse - if (is.recursive(json)) { - for (i in seq_along(json)) { - json[i] <- list(renv_json_read_remap(json[[i]], map)) - } - } - - json - - } - - # load the renv profile, if any - renv_bootstrap_profile_load(project) - - # construct path to library root - root <- renv_bootstrap_library_root(project) - - # construct library prefix for platform - prefix <- renv_bootstrap_platform_prefix() - - # construct full libpath - libpath <- file.path(root, prefix) - - # run bootstrap code - renv_bootstrap_exec(project, libpath, version) - - invisible() - -}) diff --git a/renv/settings.json b/renv/settings.json deleted file mode 100644 index dec23cf4..00000000 --- a/renv/settings.json +++ /dev/null @@ -1,19 +0,0 @@ -{ - "bioconductor.version": null, - "external.libraries": [], - "ignored.packages": [], - "package.dependency.fields": [ - "Imports", - "Depends", - "LinkingTo" - ], - "ppm.enabled": true, - "ppm.ignored.urls": [], - "r.version": null, - "snapshot.type": "implicit", - "use.cache": true, - "vcs.ignore.cellar": true, - "vcs.ignore.library": true, - "vcs.ignore.local": true, - "vcs.manage.ignores": true -} From aa46610bbb1b4b5ff0cc18b3695c6f0028365948 Mon Sep 17 00:00:00 2001 From: Jean Cochrane