File tree 1 file changed +7
-0
lines changed
1 file changed +7
-0
lines changed Original file line number Diff line number Diff line change @@ -33,6 +33,13 @@ throughput sequencing analysis, we suggest using the `bcbio installer
33
33
which fully wraps CloudBioLinux and provides an easy path to customize install
34
34
directories, organisms and biological data installed.
35
35
36
+ To modify/add data/package recipies to bcbio, edit the below configs:
37
+
38
+ - bcbio data recipes: https://github.com/chapmanb/cloudbiolinux/tree/master/ggd-recipes
39
+ - bcbio data index1: https://github.com/chapmanb/cloudbiolinux/blob/master/config/biodata.yaml
40
+ - bcbio data index2: https://github.com/bcbio/bcbio-nextgen/tree/master/config/genomes
41
+ - bcbio conda packages index: https://github.com/chapmanb/cloudbiolinux/blob/master/contrib/flavor/ngs_pipeline_minimal/packages-conda.yaml
42
+
36
43
We recommend using, or developing, a custom flavor to choose tools of interest
37
44
to install. The amount of bioinformatics software continues to increase -- there are
38
45
`over 1000 recipes in bioconda <https://github.com/bioconda/bioconda-recipes >`_
You can’t perform that action at this time.
0 commit comments