Skip to content

Commit 55b3cb3

Browse files
authored
update readme
1 parent e6dc72d commit 55b3cb3

File tree

1 file changed

+7
-0
lines changed

1 file changed

+7
-0
lines changed

README.rst

+7
Original file line numberDiff line numberDiff line change
@@ -33,6 +33,13 @@ throughput sequencing analysis, we suggest using the `bcbio installer
3333
which fully wraps CloudBioLinux and provides an easy path to customize install
3434
directories, organisms and biological data installed.
3535

36+
To modify/add data/package recipies to bcbio, edit the below configs:
37+
38+
- bcbio data recipes: https://github.com/chapmanb/cloudbiolinux/tree/master/ggd-recipes
39+
- bcbio data index1: https://github.com/chapmanb/cloudbiolinux/blob/master/config/biodata.yaml
40+
- bcbio data index2: https://github.com/bcbio/bcbio-nextgen/tree/master/config/genomes
41+
- bcbio conda packages index: https://github.com/chapmanb/cloudbiolinux/blob/master/contrib/flavor/ngs_pipeline_minimal/packages-conda.yaml
42+
3643
We recommend using, or developing, a custom flavor to choose tools of interest
3744
to install. The amount of bioinformatics software continues to increase -- there are
3845
`over 1000 recipes in bioconda <https://github.com/bioconda/bioconda-recipes>`_

0 commit comments

Comments
 (0)