Merge pull request #1635 from cmu-delphi/release/delphi-epidata-4.1.33

Release Delphi Epidata 4.1.33

Author: melange396

.bumpversion.cfg

@@ -1,5 +1,5 @@
 [bumpversion]
-current_version = 4.1.32
+current_version = 4.1.33
 commit = False
 tag = False
 

.github/workflows/performance-tests-one-time.yml

@@ -1,6 +1,6 @@
 [metadata]
 name = Delphi Development
-version = 4.1.32
+version = 4.1.33
 
 [options]
 packages =

dev/local/setup.cfg

@@ -214,7 +214,7 @@ GEM
       jekyll-seo-tag (~> 2.1)
     minitest (5.17.0)
     multipart-post (2.1.1)
-    nokogiri (1.18.3)
+    nokogiri (1.18.4)
       mini_portile2 (~> 2.8.2)
       racc (~> 1.4)
     octokit (4.20.0)

docs/Gemfile.lock

@@ -43,6 +43,7 @@ As of May 2024, NSSP received data from 78% of US EDs.
 
 The percent visits signals are calculated as a fraction of visits at facilities reporting to NSSP, rather than all facilities in the area.
 `county`, `state` and `nation` level data is reported as-is from NSSP, without modification, while `hhs`, `hrr` and `msa` are estimated by Delphi.
+State and HSA-level values are calculated and published by NSSP; County level values are not published individually, but are approximations copied from the HSA the county is in (every county in an HSA will have identical values).
 
 ### Geographic weighting
 As the original data is a percentage and raw case counts are not available, `hrr`,`msa`, and `hhs` values are computed from county-level data using a weighted mean. Each county is assigned a weight equal to its population in the last census (2020). Unreported counties are implicitly treated as having a weight of 0 or a value equal to the group mean.
@@ -69,6 +70,8 @@ The following states report no data through NSSP at the county level: CA, WA, AK
 
 South Dakota, Missouri, and territories report no data through NSSP at the state level.
 
+The only completely non-reporting state is Missouri.
+
 
 ## Lag and Backfill
 
@@ -84,6 +87,9 @@ Counties with `NA` values are as originally reported in the dataset from which t
 
 ## Limitations
 
+As noted above, only state and HSA-level values are calculated and published by NSSP; County level values are not published individually, but are approximations copied from the HSA the county is in (every county in an HSA will have identical values).
+The HSA (Health Service Area) definitions used are known as ["NCI Modified"](https://seer.cancer.gov/seerstat/variables/countyattribs/hsa.html).
+
 There is substantial missingness at the county level. This tends to impact more rural and lower population locations. See the [missingness section](#missingness) for more information.
 
 Not all counties contain reporting EDs, including in states where NSSP reports state-level data.
@@ -104,4 +110,4 @@ Some low population counties occasionally report outliers, e.g. 33.33%, 50%, 100
 This source is derived from the CDC's [Respiratory Virus Response NSSP Emergency Department Visit Trajectories dataset](https://data.cdc.gov/Public-Health-Surveillance/2023-Respiratory-Virus-Response-NSSP-Emergency-Dep/rdmq-nq56/about_data).
 There is another version of the dataset that includes [state data only](https://data.cdc.gov/Public-Health-Surveillance/2023-Respiratory-Virus-Response-NSSP-Emergency-Dep/7mra-9cq9/about_data).
 
-This data was originally published by the CDC, and is made available here as a convenience to the forecasting community under the terms of the original license, which is [U.S. Government Public Domain](https://www.usa.gov/government-copyright).
+This data was originally published by the CDC, and is made available here as a convenience to the forecasting community under the terms of the original license, which is [U.S. Government Public Domain](https://www.usa.gov/government-copyright).

docs/api/covidcast-signals/nssp.md

@@ -30,8 +30,7 @@ The archive includes complete documentation, including a Methodology Report on
 survey design, a survey weighting guide, guides to the aggregate and microdata,
 and example code. Aggregate contingency tables are available for public download
 and restricted microdata can be obtained upon request. If you are a researcher
-and would like to get access to the data, see our page on getting [data
-access](data-access.md).
+and would like to get access to the data, see our page on getting [data access](data-access.md).
 
 If you have questions about the survey or getting access to data, contact us at
 <[email protected]>.

docs/symptom-survey/index.md

@@ -15,7 +15,7 @@ Epidata <- (function() {
   # API base url
   BASE_URL <- getOption('epidata.url', default = 'https://api.delphi.cmu.edu/epidata/')
 
-  client_version <- '4.1.32'
+  client_version <- '4.1.33'
 
   auth <- getOption("epidata.auth", default = NA)
 

src/client/delphi_epidata.R

@@ -22,7 +22,7 @@
   }
 })(this, function (exports, fetchImpl, jQuery) {
   const BASE_URL = "https://api.delphi.cmu.edu/epidata/";
-  const client_version = "4.1.32";
+  const client_version = "4.1.33";
 
   // Helper function to cast values and/or ranges to strings
   function _listitem(value) {

src/client/delphi_epidata.js

@@ -2,7 +2,7 @@
   "name": "delphi_epidata",
   "description": "Delphi Epidata API Client",
   "authors": "Delphi Group",
-  "version": "4.1.32",
+  "version": "4.1.33",
   "license": "MIT",
   "homepage": "https://github.com/cmu-delphi/delphi-epidata",
   "bugs": {

src/client/packaging/npm/package.json

@@ -7,7 +7,7 @@
 
 load_dotenv()
 
-VERSION = "4.1.32"
+VERSION = "4.1.33"
 
 MAX_RESULTS = int(10e6)
 MAX_COMPATIBILITY_RESULTS = int(3650)