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@@ -40,7 +40,7 @@ There are 4 alternative ways to install CNApy:
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1. The easiest way for any user to install CNApy is by downloading its installer, which is provided for Windows, Linux and MacOS, see [Using CNApy installer](#using-cnapy-installer) for more.
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2. If you already have installed Python 3.10 (no other version) on your system, you can install CNApy simply through ```pip install cnapy``` in your console. Afterwards, you can start CNApy's GUI by running either ```cnapy``` or, if this doesn't work, ```python -m cnapy``` where "python" must call your Python 3.10 installation.
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3. If you already use conda or mamba (for mamba, just change the "conda" command to "mamba"), you can create a CNApy environment named ```cnapy-1.2.6``` as follows: 1) Run ```conda create --name cnapy-1.2.6 python=3.10 pip openjdk -c conda-forge```, 2) run ```conda activate cnapy-1.2.6```, 3) run ```pip install cnapy```. Then, you can start CNApy in the cnapy-1.2.6 conda environment by running either ```cnapy``` or, if this doesn't work, ```python -m cnapy```. Note that the [cnapy conda package](https://anaconda.org/cnapy/cnapy) is currently *not* being updated due to licensing uncertainties.
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3. If you already use conda or mamba (for mamba, just change the "conda" command to "mamba"), you can create a CNApy environment named ```cnapy-1.2.7``` as follows: 1) Run ```conda create --name cnapy-1.2.7 python=3.10 pip openjdk -c conda-forge```, 2) run ```conda activate cnapy-1.2.7```, 3) run ```pip install cnapy```. Then, you can start CNApy in the cnapy-1.2.7 conda environment by running either ```cnapy``` or, if this doesn't work, ```python -m cnapy```. Note that the [cnapy conda package](https://anaconda.org/cnapy/cnapy) is currently *not* being updated due to licensing uncertainties.
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4. If you want to develop CNApy, follow the instruction for the cloning and setup of the CNApy repository using git and conda or mamba in section [Setup the CNApy development environment](#setup-the-cnapy-development-environment).
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## Documentation and Tutorials
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*If you use Windows:*
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- Download the Windows installer [from here](https://github.com/cnapy-org/CNApy/releases/download/v1.2.6/install_cnapy_here.bat)
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- Download the Windows installer [from here](https://github.com/cnapy-org/CNApy/releases/download/v1.2.7/install_cnapy_here.bat)
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- Put this file into a folder where you want CNApy to be installed.
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- Double click on the file and let the CNApy installation run
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- Afterwards, you can run CNApy by either double-clicking on the newly created CNApy desktop icon, or by double-clicking "RUN_CNApy.bat" in the newly created cnapy-1.2.6 subfolder.
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- Afterwards, you can run CNApy by either double-clicking on the newly created CNApy desktop icon, or by double-clicking "RUN_CNApy.bat" in the newly created cnapy-1.2.7 subfolder.
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*If you use Linux or MacOS*:
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- Download the Linux & MacOS installer [from here](https://github.com/cnapy-org/CNApy/releases/download/v1.2.6/install_cnapy_here.sh).
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- Download the Linux & MacOS installer [from here](https://github.com/cnapy-org/CNApy/releases/download/v1.2.7/install_cnapy_here.sh).
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- Put this file into a folder where you want CNApy to be installed.
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- Make the script executable by opening your console in the folder and run ```chmod u+x ./install_cnapy_here.sh```. Alternatively, if supported on your system, right-click on the file, go the file's settings and mark it as executable.
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- Now, either run ```./install_cnapy_here.sh``` in your console or, if supported on your system, double-click on install_cnapy_here.sh.
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- Finally, you can run CNApy by calling ```./run_cnapy.sh``` in your console (for this without another path beforehand, your console must point to the folder where run_cnapy.sh is located, e.g. if you are in the folder where install_cnapy_here.sh is located, through ```cd cnapy-1.2.6```). Alternatively, if supported by your system, double-click on "run_cnapy.sh" in the newly created cnapy-1.2.6 subfolder.
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- Finally, you can run CNApy by calling ```./run_cnapy.sh``` in your console (for this without another path beforehand, your console must point to the folder where run_cnapy.sh is located, e.g. if you are in the folder where install_cnapy_here.sh is located, through ```cd cnapy-1.2.7```). Alternatively, if supported by your system, double-click on "run_cnapy.sh" in the newly created cnapy-1.2.7 subfolder.
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Technical side note: CNApy's installer is utilizing [micromamba](https://mamba.readthedocs.io/en/latest/installation/micromamba-installation.html).
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