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Support compressed fasta files as input for indexing #18

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cpockrandt opened this issue May 8, 2020 · 3 comments
Open

Support compressed fasta files as input for indexing #18

cpockrandt opened this issue May 8, 2020 · 3 comments
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enhancement New feature or request

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@cpockrandt
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@cpockrandt cpockrandt added the enhancement New feature or request label May 8, 2020
@grenaud
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grenaud commented Mar 23, 2024

I second this enhancement.

@grenaud
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grenaud commented Mar 24, 2024

however, this seems to work:
genmap index -F <(zcat input.fa.gz) -I output_dir

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grenaud commented Mar 26, 2024

also write the bed+wig as bgzipped would be good.

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@grenaud @cpockrandt