Merge pull request #180 from cpp-lln-lab/dev

[FIX] apply patch end of line extra tab

Author: Remi-Gau

.github/workflows/bids_validator.yml

@@ -5,7 +5,7 @@ on:
     branches:
       - master
   pull_request:
-    branches: 'master'
+    branches: ['master']
 
 env:
   OCTFLAGS: --no-gui --no-window-system --silent
@@ -23,27 +23,23 @@ jobs:
     - name: Make jsonread for octave
       run: |
         sudo apt-get -y -qq update
-        sudo apt-get -y install octave 
+        sudo apt-get -y install octave
         sudo apt-get -y install liboctave-dev
         cd lib/JSONio
         mkoctfile --mex jsonread.c jsmn.c -DJSMN_PARENT_LINKS
         cd ..
 
     - name: Update octave path
       run: |
+        octave $OCTFLAGS --eval "addpath(pwd); savepath();"
         octave $OCTFLAGS --eval "addpath(genpath(fullfile(pwd, 'lib'))); savepath();"
-        octave $OCTFLAGS --eval "addpath(genpath(fullfile(pwd, 'src'))); savepath();" 
+        octave $OCTFLAGS --eval "addpath(genpath(fullfile(pwd, 'src'))); savepath();"
 
     - name: Install BIDS validator
       run: |
         sudo npm install -g [email protected]
 
-    - name: Create dummy dataset and validate it 
+    - name: Create dummy dataset and validate it
       run: |
         cd tests/manualTests
         octave $OCTFLAGS --eval "test_makeRawDataset" && bids-validator `pwd`/output/raw/ --ignoreNiftiHeaders
-
-  
-
-
-

.github/workflows/check_markdown.yml

@@ -7,11 +7,11 @@ on:
     branches:
       - master
   pull_request:
-    branches: '*'
+    branches: ['*']
 
 jobs:
   markdown-link-check:
     runs-on: ubuntu-latest
     steps:
     - uses: actions/checkout@master
-    - uses: gaurav-nelson/github-action-markdown-link-check@v1
+    - uses: gaurav-nelson/github-action-markdown-link-check@v1

.github/workflows/check_md_links.yml

@@ -5,8 +5,7 @@ on:
     branches:
       - master
   pull_request:
-    branches: '*'
-
+    branches: ['*']
 jobs:
   build:
 

.github/workflows/miss_hit.yml

@@ -6,7 +6,7 @@ on:
       - master
       - dev
   pull_request:
-    branches: '*'
+    branches: ['*']
 
 jobs:
   build:
@@ -21,7 +21,7 @@ jobs:
     - name: Make jsonread for octave
       run: |
         sudo apt-get -y -qq update
-        sudo apt-get -y install octave 
+        sudo apt-get -y install octave
         sudo apt-get -y install liboctave-dev
         cd lib/JSONio
         mkoctfile --mex jsonread.c jsmn.c -DJSMN_PARENT_LINKS
@@ -30,7 +30,7 @@ jobs:
       uses: joergbrech/moxunit-action@master
       with:
         tests: tests # files or directories containing the MOxUnit test cases
-        src: src # directories to be added to the Octave search path before running the tests. 
+        src: src # directories to be added to the Octave search path before running the tests.
         ext: tests/utils # External resources to add to the search put (excluded from coverage)
         # data: # Directory for test data
         with_coverage: true

.github/workflows/run_tests.yml

@@ -0,0 +1,44 @@
+repos:
+
+-   repo: local
+
+    hooks:
+
+    - id: mh_version
+      name: mh_version
+      entry: mh_style
+      args: [-v]
+      verbose: true
+      language: python
+      additional_dependencies: [miss_hit_core]
+
+    # - id: mh_style
+    #   name: mh_style
+    #   entry: mh_style
+    #   args: [--process-slx, --fix]
+    #   files: ^(.*\.(m|slx))$
+    #   language: python
+    #   additional_dependencies: [miss_hit_core]
+
+    # - id: mh_metric
+    #   name: mh_metric
+    #   entry: mh_metric
+    #   args: [--ci]
+    #   files: ^(.*\.(m|slx))$
+    #   language: python
+    #   additional_dependencies: [miss_hit_core]
+
+    # - id: mh_lint
+    #   name: mh_lint
+    #   entry: mh_lint
+    #   files: ^(.*\.(m|slx))$
+    #   language: python
+    #   additional_dependencies: [miss_hit]
+
+- repo: https://github.com/pre-commit/pre-commit-hooks
+  rev: v2.0.0
+  hooks:
+    - id: trailing-whitespace
+    - id: end-of-file-fixer
+    - id: check-yaml
+    - id: check-added-large-files

.pre-commit-config.yaml

@@ -23,4 +23,4 @@ formats:
 python:
   version: 3.7
   install:
-    - requirements: requirements.txt
+    - requirements: requirements.txt

.readthedocs.yml

@@ -32,4 +32,4 @@
   ],
   "license": "MIT license",
   "upload_type": "software"
-}
+}