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remove .json extension from filename on automatic conversion to csv when running plantcv-run-workflow #1679

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AFis-245 opened this issue Mar 6, 2025 · 2 comments
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@AFis-245
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AFis-245 commented Mar 6, 2025

Describe the bug
When running plantcv-run-workflow the csv files that are created still include the .json extension in the name.

To Reproduce
Steps to reproduce the behavior (including sample data and code really help):

  1. specify the name of the output json file in the config file: config.json = "./results/output_control.json"
  2. Run plantcv-run-workflow in terminal
  3. See error: this is the name it gets saved as /results/output_control.json-single-value-traits.csv

Expected behavior
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Local environment (please complete the following information):

  • OS: macOS
  • Environment: conda
  • PlantCV Version: 4.7.dev

Additional context
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@AFis-245 AFis-245 added the help wanted Request help label Mar 6, 2025
@nfahlgren
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Thanks @AFis-245, does this cause an error or just to make it cleaner?

@AFis-245
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AFis-245 commented Mar 6, 2025

@nfahlgren It still works fine. It pretty much just looks weird, but I just manually renamed the file for now and there aren't any problems with it.

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