diff --git a/episodes/09-challenges.md b/episodes/09-challenges.md index 4d934944..26496d49 100644 --- a/episodes/09-challenges.md +++ b/episodes/09-challenges.md @@ -246,3 +246,12 @@ def count_colonies_enhanced(image_filename, sigma=1.0, min_colony_size=10, conne - These methods are useful for many scientific problems, especially those involving morphometrics. :::::::::::::::::::::::::::::::::::::::::::::::::: + + +:::::::::::::::::::::::::::::::::::::::: discussion + +## Where to go from here? + +Take a look at our [curated list of resources](further-reading.md) for further publicly available courses, resources and scientific literature around image processing and more. + +:::::::::::::::::::::::::::::::::::::::::::::::::: \ No newline at end of file diff --git a/learners/further-reading.md b/learners/further-reading.md new file mode 100644 index 00000000..dd889fc7 --- /dev/null +++ b/learners/further-reading.md @@ -0,0 +1,28 @@ +--- +title: Further Reading +permalink: /reading/ +--- + +## Where to go from here + +- [EMBL Bio-IT Python Workshop - Image Processing](https://git.embl.org/grp-bio-it-workshops/python-workshop-image-processing) +- [Introduction to Programming in the Biological Sciences Bootcamp Caltech](https://justinbois.github.io/bootcamp/2021/index.html) + - [Intro to Image Processing with scikit-image](https://justinbois.github.io/bootcamp/2023/lessons/l44_intro_to_image_processing.html) + - [Basic image quantification](https://justinbois.github.io/bootcamp/2023/lessons/l45_segmentation.html) +- [Intermediate Python Course EMBL Numpy section](https://grp-bio-it-workshops.embl-community.io/intermediate-python/02-data/index.html) +- [Scikit-image YouTube tutorials](https://www.youtube.com/playlist?list=PLBKcU7Ik-ir9Fi_hM_A6_U2UTpm7ACUtl) +- [Introduction to Bioimage Analysis by Pete Bankhead](https://bioimagebook.github.io/index.html) +- [IAFIG-RMS Python for Bioimage Analysis Course repository](https://github.com/RMS-DAIM/Python-for-Bioimage-Analysis) +- [Introduction to artificial neural networks in Python](https://carpentries-incubator.github.io/machine-learning-neural-python/index.html) + +## Where to find more help + +- [Image.sc Forum](https://image.sc/) +- [NFDI4BioImage Training Materials collection](https://nfdi4bioimage.github.io/training/readme.html) + +## Scientific Literature + +- [Checklist for publishing images and analyses ](https://www.nature.com/articles/s41592-023-01987-9) +- [REMBI: Recommended Metadata for Biological Images](https://www.nature.com/articles/s41592-021-01166-8) +- ["Twenty questions": a schema for a set of questions to guide analyses](https://www.nature.com/articles/s41592-023-01919-7) +