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windows runner debug
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.github/workflows/test.yml

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@@ -20,7 +20,7 @@ jobs:
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fail-fast: false
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matrix:
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os: [windows-latest] # ubuntu-latest, macos-latest
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python-version: ["3.10", "3.11"] # -> Will re-enable support for py312 once pyg is released, "3.10",
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python-version: ["3.11"] # -> Will re-enable support for py312 once pyg is released, "3.10",
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runs-on: ${{ matrix.os }}
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timeout-minutes: 30
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with:
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environment-file: ${{ env.ENV_FILE }}
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environment-name: graphium
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cache-environment: true
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cache-environment: false
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cache-downloads: true
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create-args: >-
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python=${{ matrix.python-version }}
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- name: Install library
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run: python -m pip install --no-deps --no-build-isolation -e . -v # `-e` required for correct `coverage` run.
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- name: Debug Windows Testing
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run: mamba install rdkit=2024.03.4
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if: matrix.os == 'windows-latest'
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- name: Run tests
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run: |
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export PATH="$CONDA_PREFIX/Library/bin:$PATH"
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echo "Current PATH: $PATH"
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# Print debug information
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echo "RDBASE: $RDBASE"
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echo "PATH: $PATH"
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python -c "import rdkit; print('RDKit version:', rdkit.__version__)"
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micromamba list rdkit
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pytest
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- name: Test CLI

env_windows.yml

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@@ -84,4 +84,3 @@ dependencies:
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# Build deps
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- setuptools-scm
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- build
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- pywin32

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