README.md

orthoevol-snakemake

A snakemake workflow for the OrthoEvol python package.

Authors

• Shaurita Hutchins
• Rob Gilmore

Usage

Simple

Install workflow

Clone the git repository and change to directory.

Configure workflow

Configure the workflow according to your needs via editing the file config.yaml.

Execute workflow

Test your configuration by performing a dry-run via

[username@hostname]$ snakemake --use-conda -n

Execute the workflow locally via

[username@hostname]$ snakemake --use-conda --cores $N

Run a specific rule

[username@hostname]$ snakemake blastn --use-conda --cores $N

Investigate results