v3.2

Author: komstat

JGA_metadata.xlsx

@@ -3,8 +3,8 @@
 ## 日本語
 
 * 生命情報・DDBJ センター
-* 公開日: 2024-10-23
-* version: v3.1
+* 公開日: 2025-01-16
+* version: v3.2
 
 [Bioinformation and DDBJ Center](https://www.ddbj.nig.ac.jp/index-e.html) のデータベースに登録するためのメタデータ XML を生成、チェックするツール。
 * [DDBJ Sequence Read Archive (DRA)](https://www.ddbj.nig.ac.jp/dra/submission.html): Submission、Experiment、Run と Analysis (任意) XML を生成・チェックするためのエクセルとスクリプト
@@ -13,6 +13,7 @@
 
 ## 履歴
 
+* 2025-01-16: v3.2 TEL 削除
 * 2024-10-23: v3.1 Library Source SINGLE CELL
 * 2024-07-05: v3.0 シート名に DB prefix を付加
 * 2024-07-04: v2.9.1 Sample 属性を全て ATTRIBUTE に格納
@@ -328,8 +329,8 @@ TBD
 ## English
 
 * Bioinformation and DDBJ Center
-* release: 2024-10-23
-* version: v3.1
+* release: 2025-01-16
+* version: v3.2
 
 These files are Excel, container images and tools for generation and validation of metadata XML files for databases of [Bioinformation and DDBJ Center](https://www.ddbj.nig.ac.jp/index-e.html).
 * [DDBJ Sequence Read Archive (DRA)](https://www.ddbj.nig.ac.jp/dra/submission-e.html): generate and check Submission, Experiment and Run XML files.
@@ -338,6 +339,7 @@ These files are Excel, container images and tools for generation and validation
 
 ## History
 
+* 2025-01-16: v3.2 TEL removed
 * 2024-10-23: v3.1 Library Source SINGLE CELL
 * 2024-07-05: v3.0 DB prefix added to sheet name
 * 2024-07-04: v2.9.1 Store all sample attributes in SAMPLE_ATTRIBUTE

README.md

@@ -11,6 +11,7 @@ require 'optparse'
 #
 
 # Update history
+# 2025-01-16 phone removed
 # 2024-07-05 DB prefix added to sheet name
 # 2024-07-04 Record all sample attributes in the sample attribute elements
 # 2024-05-17 Change the way of describing Sample attributes
@@ -151,17 +152,17 @@ for num, line in submission_a
     j = num
     contact_a = Array.new
     pi_a = Array.new
-    while submission_a[j][1][0] && /\d/ =~ submission_a[j][1][0].to_s && submission_a[j][1][3] # if there is a number and mail address
+    while submission_a[j][1][0] && /\d/ =~ submission_a[j][1][0].to_s && submission_a[j][1][3] # if there is a mail address
 
       # PI
       if /Principal Investigator/ =~ submission_a[j][1][0].to_s
         # center name is fixed to Individual
         submission_h.store("center_name", "Individual")
-        submission_h.store("organization", submission_a[j][1][5])
-        pi_a.push(submission_a[j][1][1..5])
+        submission_h.store("organization", submission_a[j][1][4])
+        pi_a.push(submission_a[j][1][1..4])
       end
 
-      contact_a.push(submission_a[j][1][1..5])
+      contact_a.push(submission_a[j][1][1..4])
       j += 1
 
     end