README.md

Cryo ET Tomogram Dataset Search with Camel's OWL framework.

Searching a Cryogenic Electron tomogram dataset of cellular proteins and other organisms, with the help of thecamel-ai's OWL (Optimized Workforce Learning) framework, with native browser interaction.

General Introduction Video

https://youtu.be/81arCK0RHwo

CryoET Tomogram Search

An AI-powered tool for searching and analyzing protein tomograms from the CZI CryoET Data Portal using CAMEL-AI's OWL framework.

--- Browsing Images

Sample Testing

Running a sample script is relatively straightforward :

Activating Environment

Set up your virtual environment with the conda-forge channels using a package manager such as mamba.

mamba create -n owl_env python=3.12
mamba activate owl_env

Setting up Environment Variables

Currently only Gemini and Groq platforms are only supported.

export GEMINI_API_KEY={your_key}
export GROQ_API_KEY={your_key}
export OPENAI_API_BASE_URL={https://api.groq.com/openai/v1}

Installation

pip install -r requirements.txt
playwright install

Usage :

python run.py "salmonella"

Features

-- Web-based search of CryoET Data Portal -- Automated tomogram analysis -- Data export capabilities