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Some parameters must be given in the nano-meter scale #2

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kaizu opened this issue Mar 3, 2019 · 1 comment
Open
4 tasks done

Some parameters must be given in the nano-meter scale #2

kaizu opened this issue Mar 3, 2019 · 1 comment
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@kaizu
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kaizu commented Mar 3, 2019 •
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Though the point coordinates are given in the "meter" scale, the unit of some parameters must be given in nano-scale.

  • detector_focal_point
  • psf_depth_cutoff
  • psf_radial_cutoff
  • psf_width

https://github.com/ecell/scopyon/blob/master/examples/defaults.ini
kaizu added a commit that referenced this issue Mar 4, 2019
@kaizu
#2 Modify the unit of detector_focal_point (and lengths in read_scopy…
45b8a60 
…on) from nano meter to meter
kaizu added a commit that referenced this issue Mar 4, 2019
@kaizu
#2 Modify the unit of psf_depth_cutoff
d18c902
kaizu added a commit that referenced this issue Mar 4, 2019
@kaizu
#2 Modify the unit of psf_radial_cutoff
8a049e9
kaizu added a commit that referenced this issue Mar 4, 2019
@kaizu
#2 Modify the unit of psf_width
28f929b
kaizu added a commit that referenced this issue Mar 4, 2019
@kaizu
#2 Edit the unit in dump
d46eea8
kaizu added a commit that referenced this issue Mar 4, 2019
@kaizu
#2 len(r) is no longer equal to psf_radial_cutoff
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@kaizu
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kaizu commented Mar 4, 2019 •
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Wave lengths are also given in nano meter now.

  • source_wavelength
  • psf_wavelength
  • psf_max_wave_length
  • psf_min_wave_length
  • fluorophore_radius

kaizu added a commit that referenced this issue Mar 4, 2019
@kaizu
#2 Modify the unit of wave lengths
411cada
kaizu added a commit that referenced this issue Mar 4, 2019
@kaizu
#2 Modify the unit of fluorophore_radius
6d58add
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