Citing

[jjkoehorst]

In material methods of a paper we are currently writing we have extensively used this method for downloading genomes. Is there a paper which could be cited beside mentioning it?

[nicsilvester]

Unfortunately, not yet. We are currently working on a manuscript for these tools. In the meantime I suggest referencing the public GitHub repository.

[nicsilvester]

Update: We are planning to submit an application note for publication soon. First we would like to make a few more additions to the scripts:

• assemblies get the correct sequence version (awaiting a new API coming soon from ENA)
• add tests to check installation
• look at making pip installable (mainly it's the version 2 vs 3 python issue that's held this one up)