Skip to content

CDS entries DataClass CON shouldn't require CO lines #47

@nbuso

Description

@nbuso

CDS entries with dataclass CON are checked to contain CO lines.
From the documentation for entries with (con)structed sequences is not clear the presence of CO lines is mandatory; see paragraph 3.4.14 in:
ftp://ftp.ebi.ac.uk/pub/databases/embl/doc/usrman.txt

The current validation in EmblEntryReader is setting an error per entry, and for a parsing application it will generate a log for most of the entries resulting in hundreds MB of logs.

This check should be set at a different Severity level or bypassed with ReaderOptions.isIgnoreParserErrors() == true

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions