CDS entries dealing with AH lines #48
Description
Coding entries contains AH lines also in Standard data class.
Errors are of the type:
Unknown line type: AH LOCAL_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
Example entry from file: std/cum_std_inv_01_r137.cds
ID DAB41761; SV 1; linear; genomic DNA; STD; INV; 1533 BP.
XX
PA BK010358.1
XX
DT 16-JUL-2018 (Rel. 137, Created)
DT 16-JUL-2018 (Rel. 137, Last updated, Version 1)
XX
DE Heliconius melpomene (postman butterfly) cytochrome P450 CYP405A4
XX
KW TPA; TPA:inferential.
XX
OS Heliconius melpomene (postman butterfly)
OC Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Papilionoidea;
OC Nymphalidae; Heliconiinae; Heliconiini; Heliconius.
XX
RN [1]
RC Publication Status: Online-Only
RP 1-5039
RX DOI; 10.1186/1471-2164-10-574.
RX PUBMED; 19954531.
RA Zagrobelny M., Scheibye-Alsing K., Jensen N.B., Moller B.L., Gorodkin J.,
RA Bak S.;
RT "454 pyrosequencing based transcriptome analysis of Zygaena filipendulae
RT with focus on genes involved in biosynthesis of cyanogenic glucosides";
RL BMC Genomics 10:574-574(2009).
XX
RN [2]
RC Publication Status: Available-Online prior to print
RP 1-5039
RX DOI; .1007/s00239-018-9854-8.
RX PUBMED; 29974176.
RA Zagrobelny M., Jensen M.K., Vogel H., Feyereisen R., Bak S.;
RT "Evolution of the Biosynthetic Pathway for Cyanogenic Glucosides in
RT Lepidoptera";
RL J. Mol. Evol. 86(6):379-394(2018).
XX
RN [3]
RP 1-5039
RA Zagrobelny M., Jensen M.K., Vogel H., Feyereisen R., Bak S.;
RT ;
RL Submitted (17-NOV-2017) to the INSDC.
RL Department of Plant and Environmental Sciences, University of Copenhagen,
RL Thorvaldsensvej 40, Frederiksberg C, Copenhagen 1871, Denmark
XX
DR MD5; 0fdc51a4288be7834c8c4de6bbb12cab.
XX
AH LOCAL_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
AS 1-160 CAEZ01010737.1 92003-92162 c
AS 161-270 CAEZ01010737.1 92669-92778 c
AS 271-364 CAEZ01010737.1 93023-93116 c
AS 365-550 CAEZ01010737.1 94792-94977 c
AS 551-620 CAEZ01010737.1 95076-95145 c
AS 621-747 CAEZ01010737.1 95230-95356 c
AS 748-957 CAEZ01010737.1 95438-95647 c
AS 958-1201 CAEZ01010737.1 95870-96113 c
AS 1202-1372 CAEZ01010737.1 96335-96505 c
AS 1373-1533 CAEZ01010737.1 96881-97041 c
XX
FH Key Location/Qualifiers
FH
FT source 1..1533
FT /organism="Heliconius melpomene"
FT /mol_type="genomic DNA"
FT /db_xref="taxon:34740"
FT CDS join(BK010358.1:1..160,BK010358.1:667..776,
FT BK010358.1:1021..1114,BK010358.1:2790..2975,
FT BK010358.1:3074..3143,BK010358.1:3228..3354,
FT BK010358.1:3436..3645,BK010358.1:3868..4111,
FT BK010358.1:4333..4503,BK010358.1:4879..5039)
FT /codon_start=1
FT /gene="CYP405A4"
FT /product="cytochrome P450 CYP405A4"
FT /protein_id="DAB41761.1"
FT /translation="MFFLLLVLLVISLILIQDFVKKRGYKWKKLSEFPGDRPLPLVGNG
FT LDIGFDADEASFRLIKMWEKHGKQNFRLSVGSEDWLMLCEPEDIKVLLNDNFELSKPLE
FT RNAAMKPFFGYSVSTSEGERWKSVRKLMTPSFHFKALDRAADDFGKHTQTLFELIDSYE
FT GKSPVNIYTYLKPYMLDMLSVNLFGVEKNYLKNRDHPYIKSSSKMIKIITYNYFSYWRN
FT NSYLVRFTPLHTEMQNIIRDVKQNSSDIITQRRKILNKMIEETKSNNKNIDLNYDTFIE
FT DKLAGGCLLDRFILSVSPNGDPEKDAIINEEITLTLFTGHLTTSMTMCNAMYLMSLYPE
FT VQQKVLDEQKAIFGKDLNRQATTQDLNDMKYLEALIKETIRFIPTIPRIGRQLQKDLKL
FT SDGRVAPAGTSVIVFFNAAARNPRTYTEPEKFMPERFFDTTMHPFAFVPFSAGPRNCVA
FT FRYAWIVLKATLSNIIRRYEILPGPEPKFAFRLITESTNGLHLHYKKRDICA"
XX
SQ Sequence 1533 BP; 510 A; 288 C; 302 G; 433 T; 0 other;
atgtttttct tactgttagt tctgctcgtt atatctttaa tattgatcca agattttgtc 60
aagaaacgtg ggtacaaatg gaagaagctt tcagaatttc ccggtgacag accgttacca 120
ttggtcggga atggcctaga catcggattc gatgcagacg aagcgtcttt tagattgatt 180
aaaatgtggg aaaaacatgg aaaacaaaat ttccgtctgt ctgttggatc cgaggactgg 240
ctcatgctgt gcgaacctga agacattaag gtacttctaa acgacaattt tgagctttcg 300
aaacctctag agagaaatgc agccatgaaa ccattctttg gctactccgt atccacttct 360
gagggagaaa gatggaaatc agtgagaaag ctgatgactc caagttttca ctttaaagct 420
ttggaccgag ctgctgacga tttcggcaaa cacactcaaa cactctttga gctcatagat 480
tcttatgaag gcaagagtcc agtcaatata tacacatatt tgaagccgta catgctcgat 540
atgttaagcg ttaatctttt tggagttgaa aagaattacc ttaaaaaccg tgatcatcca 600
tatattaagt ccagcagcaa aatgattaag attataacat acaattactt ttcctactgg 660
agaaataata gttacttagt aagatttact ccattgcaca ctgaaatgca gaatattatt 720
agagacgtca aacaaaacag ttcagatata attacgcaaa gaagaaaaat tttgaacaaa 780
atgatagaag aaaccaagag caacaataag aacatcgact tgaactatga tactttcata 840
gaagataagc ttgctggtgg ttgcttgttg gacagattta tattaagcgt gtcgccaaat 900
ggtgatcctg agaaggatgc gatcattaat gaagaaataa cattaacctt atttactgga 960
catctaacga catcaatgac gatgtgcaac gcaatgtacc tgatgtcatt gtacccagaa 1020
gtacaacaga aagttctaga tgaacagaag gctatatttg gtaaagactt gaacagacaa 1080
gcgactacac aagatttaaa tgacatgaaa tatcttgaag cgctaataaa ggagactata 1140
aggttcattc ctacaattcc cagaattggg agacaactac aaaaagactt aaagttatct 1200
gatggtcgtg tagctcctgc tggaacgtct gtaattgttt tcttcaatgc cgctgccaga 1260
aatcccagga cttacacaga accagaaaaa tttatgcctg aacgattctt tgacacaaca 1320
atgcatccat ttgcttttgt tcctttcagt gccggaccta ggaactgcgt agctttccgc 1380
tatgcgtgga ttgttctgaa ggcgacttta tcgaacatta tacggagata tgaaattctt 1440
cctggtcctg aacccaaatt tgccttccgt ctgatcacgg aatctaccaa tggattgcat 1500
ctacactaca agaagagaga tatatgtgct taa 1533
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