From c37289722defe9ab31299044adde3c812cc8a6c0 Mon Sep 17 00:00:00 2001 From: Bisaloo Date: Tue, 7 Oct 2025 01:45:32 +0000 Subject: [PATCH] [actions] update 9 packages --- renv/profiles/lesson-requirements/renv.lock | 111 ++++++++++++-------- 1 file changed, 69 insertions(+), 42 deletions(-) diff --git a/renv/profiles/lesson-requirements/renv.lock b/renv/profiles/lesson-requirements/renv.lock index 4dd81e68..fa43f01a 100644 --- a/renv/profiles/lesson-requirements/renv.lock +++ b/renv/profiles/lesson-requirements/renv.lock @@ -24,7 +24,8 @@ "NeedsCompilation": "no", "Author": "Dirk Eddelbuettel [aut, cre] (), John W. Emerson [aut], Michael J. Kane [aut] ()", "Maintainer": "Dirk Eddelbuettel ", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "DBI": { "Package": "DBI", @@ -187,10 +188,10 @@ }, "Matrix": { "Package": "Matrix", - "Version": "1.7-3", + "Version": "1.7-4", "Source": "Repository", "VersionNote": "do also bump src/version.h, inst/include/Matrix/version.h", - "Date": "2025-03-05", + "Date": "2025-08-27", "Priority": "recommended", "Title": "Sparse and Dense Matrix Classes and Methods", "Description": "A rich hierarchy of sparse and dense matrix classes, including general, symmetric, triangular, and diagonal matrices with numeric, logical, or pattern entries. Efficient methods for operating on such matrices, often wrapping the 'BLAS', 'LAPACK', and 'SuiteSparse' libraries.", @@ -226,7 +227,7 @@ "BuildResaveData": "no", "Encoding": "UTF-8", "NeedsCompilation": "yes", - "Author": "Douglas Bates [aut] (), Martin Maechler [aut, cre] (), Mikael Jagan [aut] (), Timothy A. Davis [ctb] (, SuiteSparse libraries, collaborators listed in dir(system.file(\"doc\", \"SuiteSparse\", package=\"Matrix\"), pattern=\"License\", full.names=TRUE, recursive=TRUE)), George Karypis [ctb] (, METIS library, Copyright: Regents of the University of Minnesota), Jason Riedy [ctb] (, GNU Octave's condest() and onenormest(), Copyright: Regents of the University of California), Jens Oehlschlägel [ctb] (initial nearPD()), R Core Team [ctb] (02zz1nj61, base R's matrix implementation)", + "Author": "Douglas Bates [aut] (ORCID: ), Martin Maechler [aut, cre] (ORCID: ), Mikael Jagan [aut] (ORCID: ), Timothy A. Davis [ctb] (ORCID: , SuiteSparse libraries, collaborators listed in dir(system.file(\"doc\", \"SuiteSparse\", package=\"Matrix\"), pattern=\"License\", full.names=TRUE, recursive=TRUE)), George Karypis [ctb] (ORCID: , METIS library, Copyright: Regents of the University of Minnesota), Jason Riedy [ctb] (ORCID: , GNU Octave's condest() and onenormest(), Copyright: Regents of the University of California), Jens Oehlschlägel [ctb] (initial nearPD()), R Core Team [ctb] (ROR: , base R's matrix implementation)", "Maintainer": "Martin Maechler ", "Repository": "CRAN" }, @@ -278,7 +279,8 @@ "URL": "https://github.com/HenrikBengtsson/R.methodsS3", "BugReports": "https://github.com/HenrikBengtsson/R.methodsS3/issues", "NeedsCompilation": "no", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "R.oo": { "Package": "R.oo", @@ -305,7 +307,8 @@ "URL": "https://henrikbengtsson.github.io/R.oo/, https://github.com/HenrikBengtsson/R.oo", "BugReports": "https://github.com/HenrikBengtsson/R.oo/issues", "NeedsCompilation": "no", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "R.utils": { "Package": "R.utils", @@ -335,7 +338,8 @@ "URL": "https://henrikbengtsson.github.io/R.utils/, https://github.com/HenrikBengtsson/R.utils", "BugReports": "https://github.com/HenrikBengtsson/R.utils/issues", "NeedsCompilation": "no", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "R6": { "Package": "R6", @@ -378,7 +382,8 @@ "Description": "Provides color schemes for maps (and other graphics) designed by Cynthia Brewer as described at http://colorbrewer2.org.", "License": "Apache License 2.0", "NeedsCompilation": "no", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "Rcpp": { "Package": "Rcpp", @@ -444,7 +449,8 @@ "NeedsCompilation": "yes", "Author": "Doug Bates [aut] (), Dirk Eddelbuettel [aut, cre] (), Romain Francois [aut] (), Yixuan Qiu [aut] (), Authors of Eigen [cph] (Authorship and copyright in included Eigen library as detailed in inst/COPYRIGHTS)", "Maintainer": "Dirk Eddelbuettel ", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "RcppParallel": { "Package": "RcppParallel", @@ -554,11 +560,11 @@ }, "V8": { "Package": "V8", - "Version": "7.0.0", + "Version": "8.0.0", "Source": "Repository", "Type": "Package", "Title": "Embedded JavaScript and WebAssembly Engine for R", - "Authors@R": "c( person(\"Jeroen\", \"Ooms\", role = c(\"aut\", \"cre\"), email = \"jeroenooms@gmail.com\", comment = c(ORCID = \"0000-0002-4035-0289\")), person(\"Jan Marvin\", \"Garbuszus\", role = \"ctb\"))", + "Authors@R": "c( person(\"Jeroen\", \"Ooms\", role = c(\"aut\", \"cre\"), email = \"jeroenooms@gmail.com\", comment = c(ORCID = \"0000-0002-4035-0289\")), person(\"George\", \"Stagg\", role = \"ctb\", comment = c(ORCID = \"0009-0006-3173-9846\")), person(\"Jan Marvin\", \"Garbuszus\", role = \"ctb\"))", "Description": "An R interface to V8 : Google's open source JavaScript and WebAssembly engine. This package can be compiled either with V8 version 6 and up or NodeJS when built as a shared library.", "License": "MIT + file LICENSE", "URL": "https://jeroen.r-universe.dev/V8", @@ -584,7 +590,7 @@ "Language": "en-US", "Encoding": "UTF-8", "Biarch": "true", - "Author": "Jeroen Ooms [aut, cre] (ORCID: ), Jan Marvin Garbuszus [ctb]", + "Author": "Jeroen Ooms [aut, cre] (ORCID: ), George Stagg [ctb] (ORCID: ), Jan Marvin Garbuszus [ctb]", "Maintainer": "Jeroen Ooms ", "Repository": "CRAN" }, @@ -607,7 +613,8 @@ "License": "MIT + file LICENSE", "NeedsCompilation": "no", "Author": "Tony Plate [aut, cre], Richard Heiberger [aut]", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "askpass": { "Package": "askpass", @@ -673,7 +680,8 @@ "License": "GPL-2 | GPL-3", "URL": "http://www.rforge.net/base64enc", "NeedsCompilation": "yes", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "bit": { "Package": "bit", @@ -1048,7 +1056,8 @@ "NeedsCompilation": "no", "Author": "Jennifer Bryan [cre, aut], Hadley Wickham [ctb]", "Maintainer": "Jennifer Bryan ", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "cffr": { "Package": "cffr", @@ -1653,7 +1662,8 @@ "NeedsCompilation": "no", "Author": "Steph Locke [cre], Rich FitzJohn [aut], Anne Cori [aut], Thibaut Jombart [aut]", "Maintainer": "Steph Locke ", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "distributional": { "Package": "distributional", @@ -2047,7 +2057,7 @@ }, "fastymd": { "Package": "fastymd", - "Version": "0.1.3", + "Version": "0.1.4", "Source": "Repository", "Title": "Fast Utilities for Year Month Day Objects", "Authors@R": "c( person( given = \"Tim\", family = \"Taylor\", role = c(\"aut\", \"cre\"), email = \"tim.taylor@hiddenelephants.co.uk\", comment = c(ORCID = \"0000-0002-8587-7113\") ), person( given = \"Howard\", family = \"Hinnant\", role = \"aut\", comment = \"Author of underlying algorithms for calculating Epoch days to Calendar days and vice versa\" ), person( \"jerichaux\", role = \"aut\", comment = \"Author of included branchless leap year calculation\" ) )", @@ -2068,7 +2078,7 @@ "R (>= 4.2.0)" ], "VignetteBuilder": "litedown", - "RoxygenNote": "7.3.2", + "RoxygenNote": "7.3.3", "Config/testthat/load-all": "list(export_all = FALSE, helpers = FALSE)", "NeedsCompilation": "yes", "Author": "Tim Taylor [aut, cre] (ORCID: ), Howard Hinnant [aut] (Author of underlying algorithms for calculating Epoch days to Calendar days and vice versa), jerichaux [aut] (Author of included branchless leap year calculation)", @@ -2154,16 +2164,16 @@ }, "forcats": { "Package": "forcats", - "Version": "1.0.0", + "Version": "1.0.1", "Source": "Repository", "Title": "Tools for Working with Categorical Variables (Factors)", - "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@rstudio.com\", role = c(\"aut\", \"cre\")), person(\"RStudio\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", "Description": "Helpers for reordering factor levels (including moving specified levels to front, ordering by first appearance, reversing, and randomly shuffling), and tools for modifying factor levels (including collapsing rare levels into other, 'anonymising', and manually 'recoding').", "License": "MIT + file LICENSE", "URL": "https://forcats.tidyverse.org/, https://github.com/tidyverse/forcats", "BugReports": "https://github.com/tidyverse/forcats/issues", "Depends": [ - "R (>= 3.4)" + "R (>= 4.1)" ], "Imports": [ "cli (>= 3.4.0)", @@ -2188,10 +2198,10 @@ "Config/testthat/edition": "3", "Encoding": "UTF-8", "LazyData": "true", - "RoxygenNote": "7.2.3", + "RoxygenNote": "7.3.3", "NeedsCompilation": "no", - "Author": "Hadley Wickham [aut, cre], RStudio [cph, fnd]", - "Maintainer": "Hadley Wickham ", + "Author": "Hadley Wickham [aut, cre], Posit Software, PBC [cph, fnd] (ROR: )", + "Maintainer": "Hadley Wickham ", "Repository": "CRAN" }, "formatR": { @@ -2293,7 +2303,8 @@ "ByteCompile": "yes", "Collate": "'options.R' 'appender.R' 'constants.R' 'layout.R' 'logger.R' 'scat.R' 'futile.logger-package.R'", "RoxygenNote": "5.0.1", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "futile.options": { "Package": "futile.options", @@ -2311,7 +2322,8 @@ "License": "LGPL-3", "LazyLoad": "yes", "NeedsCompilation": "no", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "gargle": { "Package": "gargle", @@ -2672,7 +2684,8 @@ "NeedsCompilation": "no", "Author": "Baptiste Auguie [aut, cre], Anton Antonov [ctb]", "Maintainer": "Baptiste Auguie ", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "gtable": { "Package": "gtable", @@ -2969,7 +2982,8 @@ "NeedsCompilation": "no", "Author": "Rich FitzJohn [aut, cre]", "Maintainer": "Rich FitzJohn ", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "igraph": { "Package": "igraph", @@ -3312,7 +3326,8 @@ "stats", "graphics" ], - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "lambda.r": { "Package": "lambda.r", @@ -3336,7 +3351,8 @@ "License": "LGPL-3", "LazyLoad": "yes", "NeedsCompilation": "no", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "latex2exp": { "Package": "latex2exp", @@ -3414,7 +3430,8 @@ "NeedsCompilation": "yes", "Author": "Deepayan Sarkar [aut, cre] (), Felix Andrews [ctb], Kevin Wright [ctb] (documentation), Neil Klepeis [ctb], Johan Larsson [ctb] (miscellaneous improvements), Zhijian (Jason) Wen [cph] (filled contour code), Paul Murrell [ctb], Stefan Eng [ctb] (violin plot improvements), Achim Zeileis [ctb] (modern colors), Alexandre Courtiol [ctb] (generics for larrows, lpolygon, lrect and lsegments)", "Maintainer": "Deepayan Sarkar ", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "lazyeval": { "Package": "lazyeval", @@ -3439,7 +3456,8 @@ "NeedsCompilation": "yes", "Author": "Hadley Wickham [aut, cre], RStudio [cph]", "Maintainer": "Hadley Wickham ", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "lifecycle": { "Package": "lifecycle", @@ -3634,7 +3652,8 @@ "URL": "https://github.com/HenrikBengtsson/matrixStats", "BugReports": "https://github.com/HenrikBengtsson/matrixStats/issues", "RoxygenNote": "7.3.2", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "memoise": { "Package": "memoise", @@ -3743,7 +3762,8 @@ "Maintainer": "Paul Gilbert ", "URL": "http://optimizer.r-forge.r-project.org/", "NeedsCompilation": "no", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "oai": { "Package": "oai", @@ -3782,7 +3802,7 @@ }, "openssl": { "Package": "openssl", - "Version": "2.3.3", + "Version": "2.3.4", "Source": "Repository", "Type": "Package", "Title": "Toolkit for Encryption, Signatures and Certificates Based on OpenSSL", @@ -4642,7 +4662,7 @@ }, "rmarkdown": { "Package": "rmarkdown", - "Version": "2.29", + "Version": "2.30", "Source": "Repository", "Type": "Package", "Title": "Dynamic Documents for R", @@ -4692,7 +4712,7 @@ "RoxygenNote": "7.3.2", "SystemRequirements": "pandoc (>= 1.14) - http://pandoc.org", "NeedsCompilation": "no", - "Author": "JJ Allaire [aut], Yihui Xie [aut, cre] (), Christophe Dervieux [aut] (), Jonathan McPherson [aut], Javier Luraschi [aut], Kevin Ushey [aut], Aron Atkins [aut], Hadley Wickham [aut], Joe Cheng [aut], Winston Chang [aut], Richard Iannone [aut] (), Andrew Dunning [ctb] (), Atsushi Yasumoto [ctb, cph] (, Number sections Lua filter), Barret Schloerke [ctb], Carson Sievert [ctb] (), Devon Ryan [ctb] (), Frederik Aust [ctb] (), Jeff Allen [ctb], JooYoung Seo [ctb] (), Malcolm Barrett [ctb], Rob Hyndman [ctb], Romain Lesur [ctb], Roy Storey [ctb], Ruben Arslan [ctb], Sergio Oller [ctb], Posit Software, PBC [cph, fnd], jQuery UI contributors [ctb, cph] (jQuery UI library; authors listed in inst/rmd/h/jqueryui/AUTHORS.txt), Mark Otto [ctb] (Bootstrap library), Jacob Thornton [ctb] (Bootstrap library), Bootstrap contributors [ctb] (Bootstrap library), Twitter, Inc [cph] (Bootstrap library), Alexander Farkas [ctb, cph] (html5shiv library), Scott Jehl [ctb, cph] (Respond.js library), Ivan Sagalaev [ctb, cph] (highlight.js library), Greg Franko [ctb, cph] (tocify library), John MacFarlane [ctb, cph] (Pandoc templates), Google, Inc. [ctb, cph] (ioslides library), Dave Raggett [ctb] (slidy library), W3C [cph] (slidy library), Dave Gandy [ctb, cph] (Font-Awesome), Ben Sperry [ctb] (Ionicons), Drifty [cph] (Ionicons), Aidan Lister [ctb, cph] (jQuery StickyTabs), Benct Philip Jonsson [ctb, cph] (pagebreak Lua filter), Albert Krewinkel [ctb, cph] (pagebreak Lua filter)", + "Author": "JJ Allaire [aut], Yihui Xie [aut, cre] (ORCID: ), Christophe Dervieux [aut] (ORCID: ), Jonathan McPherson [aut], Javier Luraschi [aut], Kevin Ushey [aut], Aron Atkins [aut], Hadley Wickham [aut], Joe Cheng [aut], Winston Chang [aut], Richard Iannone [aut] (ORCID: ), Andrew Dunning [ctb] (ORCID: ), Atsushi Yasumoto [ctb, cph] (ORCID: , cph: Number sections Lua filter), Barret Schloerke [ctb], Carson Sievert [ctb] (ORCID: ), Devon Ryan [ctb] (ORCID: ), Frederik Aust [ctb] (ORCID: ), Jeff Allen [ctb], JooYoung Seo [ctb] (ORCID: ), Malcolm Barrett [ctb], Rob Hyndman [ctb], Romain Lesur [ctb], Roy Storey [ctb], Ruben Arslan [ctb], Sergio Oller [ctb], Posit Software, PBC [cph, fnd], jQuery UI contributors [ctb, cph] (jQuery UI library; authors listed in inst/rmd/h/jqueryui/AUTHORS.txt), Mark Otto [ctb] (Bootstrap library), Jacob Thornton [ctb] (Bootstrap library), Bootstrap contributors [ctb] (Bootstrap library), Twitter, Inc [cph] (Bootstrap library), Alexander Farkas [ctb, cph] (html5shiv library), Scott Jehl [ctb, cph] (Respond.js library), Ivan Sagalaev [ctb, cph] (highlight.js library), Greg Franko [ctb, cph] (tocify library), John MacFarlane [ctb, cph] (Pandoc templates), Google, Inc. [ctb, cph] (ioslides library), Dave Raggett [ctb] (slidy library), W3C [cph] (slidy library), Dave Gandy [ctb, cph] (Font-Awesome), Ben Sperry [ctb] (Ionicons), Drifty [cph] (Ionicons), Aidan Lister [ctb, cph] (jQuery StickyTabs), Benct Philip Jonsson [ctb, cph] (pagebreak Lua filter), Albert Krewinkel [ctb, cph] (pagebreak Lua filter)", "Maintainer": "Yihui Xie ", "Repository": "CRAN" }, @@ -5012,7 +5032,8 @@ "NeedsCompilation": "no", "Author": "Simon Potter [aut, trl, cre], Simon Sapin [aut], Ian Bicking [aut]", "Maintainer": "Simon Potter ", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "socialmixr": { "Package": "socialmixr", @@ -5228,7 +5249,7 @@ }, "systemfonts": { "Package": "systemfonts", - "Version": "1.2.3", + "Version": "1.3.1", "Source": "Repository", "Type": "Package", "Title": "System Native Font Finding", @@ -5251,9 +5272,12 @@ "Suggests": [ "covr", "farver", + "ggplot2", "graphics", "knitr", + "ragg", "rmarkdown", + "svglite", "testthat (>= 2.1.0)" ], "LinkingTo": [ @@ -5287,7 +5311,8 @@ "License": "GPL (>= 2)", "URL": "http://www.stat.boogaart.de/tensorA/", "NeedsCompilation": "yes", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "textshaping": { "Package": "textshaping", @@ -6026,7 +6051,8 @@ "License": "GPL (>= 2)", "URL": "http://population.un.org/wpp", "NeedsCompilation": "no", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "xfun": { "Package": "xfun", @@ -6134,7 +6160,8 @@ "URL": "https://github.com/vubiostat/r-yaml/", "BugReports": "https://github.com/vubiostat/r-yaml/issues", "NeedsCompilation": "yes", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "ympes": { "Package": "ympes",