[feat] remove all imfill dependency, drop octave-image in ci

Author: fangq

.github/workflows/run_test.yml

@@ -22,7 +22,7 @@ jobs:
       - name: Install dependencies
         run: |
           if [[ "$RUNNER_OS" == "Linux" ]]; then
-            sudo apt-get update && sudo apt-get install -y octave cmake libcgal-dev libsuperlu-dev libsuitesparse-dev libgmp-dev libtbb-dev octave-image
+            sudo apt-get update && sudo apt-get install -y octave cmake libcgal-dev libsuperlu-dev libsuitesparse-dev libgmp-dev libtbb-dev
           elif [[ "$RUNNER_OS" == "macOS" ]]; then
             brew install gnuplot
             brew install octave
@@ -31,12 +31,6 @@ jobs:
             7z x octave_5.2.0.7z -ooctave -y
             echo "$PWD/octave/octave-5.2.0-w64-64/mingw64/bin" >> $GITHUB_PATH
           fi
-      - name: Install octave-image (Windows)
-        if: ${{ runner.os == 'Windows' }}
-        run: octave-cli --eval "pkg install -forge image"
-      - name: Install octave-image (MacOS)
-        if: ${{ runner.os == 'MacOS' }}
-        run: octave-cli --eval "pkg install -forge image"
       - name: Test linux32 binaries
         if: ${{ matrix.os == 'ubuntu-24.04' }}
         run:  rm -rf bin/*.mexa64

deislands2d.m

@@ -54,5 +54,5 @@
 
     % remote small islands of the background
 
-    cleanimg = imfill(cleanimg, 'holes');
+    cleanimg = fillholes3d(cleanimg);
 end

sample/demo_surf2vol_ex1.m

@@ -42,19 +42,8 @@
 bcutloop(isnan(bcutloop)) = []; % there can be multiple loops, remove the separators
 plot(bcutpos(bcutloop, 2) * (1 / dstep), bcutpos(bcutloop, 1) * (1 / dstep), 'w');
 
-if (isoctavemesh)
-    if (~exist('bwfill'))
-        pkg load image;
-    end
-
-    img2 = zeros(size(img), 'uint8');
-    for i = 1:size(img, 3)
-        img2(:, :, i) = bwfill(img(:, :, i), 'holes');
-    end
-    img2 = img2 + img;
-else
-    img2 = imfill(img, 'holes') + img;
-end
+img2 = fillholes3d(img);
+
 figure;
 imagesc(squeeze(img2(:, :, zslice))); % z=10
 hold on;

surf2vol.m

@@ -66,7 +66,7 @@
     % but the affine output is not correct in this case
 
     if (jsonopt('fill', 0, opt) || label)
-        im = imfill(im, 'holes');
+        im = fillholes3d(im);
         if (label)
             im = cast(im, class(elabel)) * elabel(i);
         end