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6 | 6 | Department of Bioengineering
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7 | 7 | Northeastern University
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8 | 8 | 360 Huntington Ave, Boston, MA 02115
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9 |
| -*Version: 1.9.5 (Century Egg) |
| 9 | +*Version: 1.9.5 (Lion's Head) |
10 | 10 | *License: GPL v2 or later (see COPYING)
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11 | 11 | (this license does not cover the binaries under the bin/
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12 | 12 | directory, see Section III for more details)
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@@ -36,12 +36,14 @@ cross-platform and is compatible with both MATLAB and GNU Octave
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36 | 36 | (a free MATLAB clone).
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37 | 37 |
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38 | 38 | The details of this toolbox can be found in the following
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39 |
| -papers: |
40 |
| - |
41 |
| -*Anh Phong Tran and Qianqian Fang, "Fast and high-quality tetrahedral \ |
42 |
| - mesh generation from neuroanatomical scans," arXiv preprint arXiv:1708.08954, 2017 |
43 |
| -*Qianqian Fang and David Boas, "Tetrahedral mesh generation from volumetric binary and \ |
44 |
| - gray-scale images," Proceedings of IEEE International Symposium on Biomedical Imaging \ |
| 39 | +papers (citing the first paper is highly encouraged): |
| 40 | + |
| 41 | +*Anh Phong Tran, Shijie Yan and Qianqian Fang*, (2020) “Improving \ |
| 42 | + model-based fNIRS analysis using mesh-based anatomical and \ |
| 43 | + light-transport models," Neurophotonics, 7(1), 015008 |
| 44 | +*Qianqian Fang and David Boas, "Tetrahedral mesh generation \ |
| 45 | + from volumetric binary and gray-scale images," Proceedings of \ |
| 46 | + IEEE International Symposium on Biomedical Imaging \ |
45 | 47 | (ISBI 2009), pp. 1142-1145, 2009
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46 | 48 |
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47 | 49 |
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@@ -155,15 +157,20 @@ To compile the above external tools, the below tools must be pre-installed
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155 | 157 | (tested on Ubuntu 14.04 LTS, if you use another Linux distribution, the package
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156 | 158 | names might be different)
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157 | 159 |
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158 |
| - libcgal-dev |
159 |
| - clang |
| 160 | + gcc |
160 | 161 | cmake
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| 162 | + libcgal-dev |
| 163 | + libsuitesparse-dev |
| 164 | + zlib1g-dev |
161 | 165 |
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162 | 166 | you can install these by
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163 | 167 |
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164 |
| - sudo apt-get install libcgal-dev clang cmake |
165 |
| - |
166 |
| -on Ubuntu. |
| 168 | + sudo apt-get install gcc cmake libcgal-dev libsuitesparse-dev zlib1g-dev |
| 169 | + |
| 170 | +on Ubuntu or Debian. If you use Fedora, you need to install the below packages |
| 171 | + |
| 172 | + sudo dnf install cmake CGAL-devel SuperLU-devel blas-static gcc-c++ zlib-devel octave-devel |
| 173 | + |
167 | 174 |
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168 | 175 | == # Acknowledgement ==
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169 | 176 |
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