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pyproject.toml
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# ======================================================================================
# Project metadata
# ======================================================================================
[project]
name = "missing-data-gmm"
description = "Implements the GMM algorithm and results from Abrevaya and Donald (2017)."
requires-python = ">=3.11"
dependencies = [
"pytask", "kaleido>=0.1.0.post1,<0.3",
]
dynamic = ["version"]
classifiers = [
"Intended Audience :: Science/Research",
"License :: OSI Approved :: MIT License",
"Operating System :: MacOS :: MacOS X",
"Operating System :: Microsoft :: Windows",
"Operating System :: POSIX",
"Programming Language :: Python :: 3",
"Programming Language :: Python :: 3 :: Only",
]
authors = [
{ name = "Felix Schmitz", email = "[email protected]" },
]
maintainers = [
{ name = "Felix Schmitz", email = "[email protected]" },
]
[project.readme]
file = "README.md"
content-type = "text/markdown"
[project.license]
file = "LICENSE"
[project.urls]
Repository = "https://github.com/felixschmitz/missing_data_gmm"
Github = "https://github.com/felixschmitz/missing_data_gmm"
Tracker = "https://github.com/felixschmitz/missing_data_gmm/issues"
# ======================================================================================
# Build system configuration
# ======================================================================================
[build-system]
requires = ["hatchling", "hatch_vcs"]
build-backend = "hatchling.build"
[tool.hatch.build.hooks.vcs]
version-file = "src/missing_data_gmm/_version.py"
[tool.hatch.build.targets.sdist]
exclude = ["tests"]
only-packages = true
[tool.hatch.build.targets.wheel]
only-include = ["src"]
sources = ["src"]
[tool.hatch.version]
source = "vcs"
[tool.hatch.metadata]
allow-direct-references = true
# ======================================================================================
# Pixi
# ======================================================================================
[tool.pixi.project]
channels = ["conda-forge"]
platforms = ["linux-64", "osx-64", "osx-arm64", "win-64"]
# Development Dependencies (conda)
# --------------------------------------------------------------------------------------
[tool.pixi.dependencies]
python = "3.11"
jupyterlab = "*"
plotly = ">=5.24,<6"
pre-commit = ">=4.0.1,<5"
ipykernel = ">=6.29.5,<7"
pandas = ">=2.1"
pyarrow = ">=13.0"
pygraphviz = "*"
pytask-latex = ">=0.4.2,<0.5"
pytask-parallel = ">=0.4.0"
pytask = ">=0.4.7"
python-graphviz = "*"
pyyaml = "*"
statsmodels = "*"
toml = "*"
pip = ">=24.3.1,<25"
regex = ">=2024.11.6,<2025"
# Development Dependencies (pypi)
# --------------------------------------------------------------------------------------
[tool.pixi.pypi-dependencies]
missing_data_gmm = {path = ".", editable = true}
pdbp = "*"
jax = ">=0.4.35,<0.5"
[tool.pixi.target.win-64.pypi-dependencies]
kaleido = ">=0.1.0.post1,<=0.1.0.post1"
# Features and Tasks
# --------------------------------------------------------------------------------------
[tool.pixi.feature.test.dependencies]
pytest = "*"
pytest-cov = "*"
pytest-xdist = "*"
[tool.pixi.feature.test.tasks]
tests = "pytest tests"
tests-with-cov = "pytest tests --cov-report=xml --cov=./"
# Environments
# --------------------------------------------------------------------------------------
[tool.pixi.environments]
test = {features = ["test"], solve-group = "default"}
# ======================================================================================
# Ruff configuration
# ======================================================================================
[tool.ruff]
target-version = "py311"
lint.select = ["ALL"]
lint.extend-ignore = [
"S101", # Use of `assert` detected.
"ANN", # Missing type annotations
# Avoid conflict with ruff-format
"COM812",
"ISC001",
]
fix = true
[tool.ruff.lint.per-file-ignores]
"tests/*" = ["D", "PD011"]
"**/task.py" = ["ANN"]
"**/config.py" = ["FBT003"] # modern pandas settings
"**/monte_carlo/helper.py" = ["ERA001", "PLR0911", "C901"] # commented-out replication code and match-case of MC_DESIGN
[tool.ruff.lint.pydocstyle]
convention = "google"
# ======================================================================================
# pytask configuration
# ======================================================================================
[tool.pytask.ini_options]
paths = ["./src/missing_data_gmm", "./documents"]
pdbcls = "pdbp:Pdb"
editor_url_scheme = "vscode"
task_files = ["task_*.py", "task.py", "tasks.py"]
# ======================================================================================
# pytest configuration
# ======================================================================================
[tool.pytest.ini_options]
addopts = "--pdbcls=pdbp:Pdb"
filterwarnings = []
markers = [
"wip: Tests that are work-in-progress.",
"unit: Flag for unit tests which target mainly a single function.",
"integration: Flag for integration tests which may comprise of multiple unit tests.",
"end_to_end: Flag for tests that cover the whole program.",
]
norecursedirs = ["docs"]
# ======================================================================================
# yamlfix configuration
# ======================================================================================
[tool.yamlfix]
line_length = 88
none_representation = "null"