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Hi,
following build env:
Debian 9 "Stretch" running Kernel 4.9.91 ldd --version: (Debian GLIBC 2.24-11+deb9u3) 2.24
Followed setup/build instruction as given in git readme
Situation 1:
Existing Conda environment with htslib=1.9 as dependency for other tools; additionally, installed boost=1.67.0 and cmake=3.12.2 into environment to build Mosaicatcher. Minor issue/suggestion for doc update: needed to run cmake -DBOOST_INCLUDEDIR=/PATH/TO/conda/envs/ENVNAME/include ../src/ for a successful configure. Subsequent make failed with something like /build/htslib/lib/libhts.so: undefined reference "memcpy@GLIBC_2.14" - I realized that despite the existing htslib in the environment, the setup routine downloads htslib nevertheless. No idea about the internals, of course, but I suspected this to be the source of the problem; leads to...
Situation 2:
New Conda environment containing boost=1.67.0, cmake=3.12.2 and make=4.2.1, nothing else. Cmake as above succeeds, subsequent make now seems to get past the htslib issue, but fails with this:
Hi,
following build env:
Debian 9 "Stretch" running Kernel 4.9.91
ldd --version
: (Debian GLIBC 2.24-11+deb9u3) 2.24Followed setup/build instruction as given in git readme
Situation 1:
Existing Conda environment with
htslib=1.9
as dependency for other tools; additionally, installedboost=1.67.0
andcmake=3.12.2
into environment to build Mosaicatcher. Minor issue/suggestion for doc update: needed to runcmake -DBOOST_INCLUDEDIR=/PATH/TO/conda/envs/ENVNAME/include ../src/
for a successful configure. Subsequentmake
failed with something like/build/htslib/lib/libhts.so: undefined reference "memcpy@GLIBC_2.14"
- I realized that despite the existinghtslib
in the environment, the setup routine downloadshtslib
nevertheless. No idea about the internals, of course, but I suspected this to be the source of the problem; leads to...Situation 2:
New Conda environment containing
boost=1.67.0
,cmake=3.12.2
andmake=4.2.1
, nothing else. Cmake as above succeeds, subsequentmake
now seems to get past the htslib issue, but fails with this:Any advice?
Best,
Peter
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