Skip to content

Decouple OffTargetDetector from the prymer data structures #81

Description

@msto

It'd be helpful if OffTargetDetector did not require Oligo or PrimerPair objects as input.

The off-target detection does not use any of the primer-related metrics that appear on these classes (e.g. tm, penalty), and this design constraint makes it challenging to reuse this functionality in other contexts.

I think the detection methods could be re-written to accept strings (or string tuples, for pair checking) as input. We could also consider accepting a Protocol for any class that includes a sequence or bases attribute.

Metadata

Metadata

Assignees

Labels

No labels
No labels

Type

No type
No fields configured for issues without a type.

Projects

No projects

Milestone

No milestone

Relationships

None yet

Development

No branches or pull requests

Issue actions