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build: update dependencies as of 2025-05-07 #985

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Run time

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Job	Run time
check-min-version / check	25m 43s
check (3.12) / check	33m 38s
check (3.9) / check	34m 30s
check (3.10) / check	33m 33s
check (3.11) / check	32m 59s
	2h 40m 23s