Merge pull request #15 from ggebbie/sigma1test

Sigma1test

Author: ggebbie

.gitignore

@@ -2,4 +2,5 @@
 *.jl.cov
 *.jl.mem
 /docs/build/
-*~
+*~
+outputs*

Manifest.toml

@@ -12,11 +12,11 @@ git-tree-sha1 = "ffcfa2d345aaee0ef3d8346a073d5dd03c983ebe"
 uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e"
 version = "3.2.0"
 
-[[ArgTools]]
-uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f"
-
 [[Artifacts]]
+deps = ["Pkg"]
+git-tree-sha1 = "c30985d8821e0cd73870b17b0ed0ce6dc44cb744"
 uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33"
+version = "1.3.0"
 
 [[AxisAlgorithms]]
 deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"]
@@ -41,15 +41,15 @@ version = "1.0.0"
 
 [[CategoricalArrays]]
 deps = ["DataAPI", "Future", "JSON", "Missings", "Printf", "Statistics", "StructTypes", "Unicode"]
-git-tree-sha1 = "9f6101597998e8d8cc8c99b85e4aca144354403b"
+git-tree-sha1 = "f713d583d10fc036252fd826feebc6c173c522a8"
 uuid = "324d7699-5711-5eae-9e2f-1d82baa6b597"
-version = "0.9.4"
+version = "0.9.5"
 
 [[ChainRulesCore]]
 deps = ["Compat", "LinearAlgebra", "SparseArrays"]
-git-tree-sha1 = "7d4252faf7323f3c614c9a564a31f22c547995cc"
+git-tree-sha1 = "44e9f638aa9ed1ad58885defc568c133010140aa"
 uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
-version = "0.9.36"
+version = "0.9.37"
 
 [[CodeTracking]]
 deps = ["InteractiveUtils", "UUIDs"]
@@ -70,20 +70,22 @@ uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f"
 version = "0.10.12"
 
 [[Colors]]
-deps = ["ColorTypes", "FixedPointNumbers", "InteractiveUtils", "Reexport"]
-git-tree-sha1 = "ac5f2213e56ed8a34a3dd2f681f4df1166b34929"
+deps = ["ColorTypes", "FixedPointNumbers", "Reexport"]
+git-tree-sha1 = "82f4e6ff9f847eca3e5ebc666ea2cd7b48e8b47e"
 uuid = "5ae59095-9a9b-59fe-a467-6f913c188581"
-version = "0.12.6"
+version = "0.12.7"
 
 [[Compat]]
 deps = ["Base64", "Dates", "DelimitedFiles", "Distributed", "InteractiveUtils", "LibGit2", "Libdl", "LinearAlgebra", "Markdown", "Mmap", "Pkg", "Printf", "REPL", "Random", "SHA", "Serialization", "SharedArrays", "Sockets", "SparseArrays", "Statistics", "Test", "UUIDs", "Unicode"]
-git-tree-sha1 = "919c7f3151e79ff196add81d7f4e45d91bbf420b"
+git-tree-sha1 = "4fecfd5485d3c5de4003e19f00c6898cccd40667"
 uuid = "34da2185-b29b-5c13-b0c7-acf172513d20"
-version = "3.25.0"
+version = "3.26.0"
 
 [[CompilerSupportLibraries_jll]]
-deps = ["Artifacts", "Libdl"]
+deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
+git-tree-sha1 = "8e695f735fca77e9708e795eda62afdb869cbb70"
 uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae"
+version = "0.3.4+0"
 
 [[Conda]]
 deps = ["JSON", "VersionParsing"]
@@ -138,6 +140,18 @@ uuid = "ade2ca70-3891-5945-98fb-dc099432e06a"
 deps = ["Mmap"]
 uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab"
 
+[[Dierckx]]
+deps = ["Dierckx_jll"]
+git-tree-sha1 = "5fefbe52e9a6e55b8f87cb89352d469bd3a3a090"
+uuid = "39dd38d3-220a-591b-8e3c-4c3a8c710a94"
+version = "0.5.1"
+
+[[Dierckx_jll]]
+deps = ["CompilerSupportLibraries_jll", "Libdl", "Pkg"]
+git-tree-sha1 = "a580560f526f6fc6973e8bad2b036514a4e3b013"
+uuid = "cd4c43a9-7502-52ba-aa6d-59fb2a88580b"
+version = "0.0.1+0"
+
 [[DiskArrays]]
 git-tree-sha1 = "731967c22b99f606540c45a3773e92d336fd6963"
 uuid = "3c3547ce-8d99-4f5e-a174-61eb10b00ae3"
@@ -159,10 +173,6 @@ git-tree-sha1 = "e64debe8cd174cc52d7dd617ebc5492c6f8b698c"
 uuid = "31c24e10-a181-5473-b8eb-7969acd0382f"
 version = "0.24.15"
 
-[[Downloads]]
-deps = ["ArgTools", "LibCURL", "NetworkOptions"]
-uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6"
-
 [[FFTW]]
 deps = ["AbstractFFTs", "FFTW_jll", "IntelOpenMP_jll", "Libdl", "LinearAlgebra", "MKL_jll", "Reexport"]
 git-tree-sha1 = "1b48dbde42f307e48685fa9213d8b9f8c0d87594"
@@ -256,25 +266,15 @@ uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f"
 version = "1.2.1"
 
 [[LazyArtifacts]]
-deps = ["Artifacts", "Pkg"]
+deps = ["Pkg"]
+git-tree-sha1 = "4bb5499a1fc437342ea9ab7e319ede5a457c0968"
 uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3"
-
-[[LibCURL]]
-deps = ["LibCURL_jll", "MozillaCACerts_jll"]
-uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21"
-
-[[LibCURL_jll]]
-deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"]
-uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0"
+version = "1.3.0"
 
 [[LibGit2]]
-deps = ["Base64", "NetworkOptions", "Printf", "SHA"]
+deps = ["Printf"]
 uuid = "76f85450-5226-5b5a-8eaa-529ad045b433"
 
-[[LibSSH2_jll]]
-deps = ["Artifacts", "Libdl", "MbedTLS_jll"]
-uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8"
-
 [[Libdl]]
 uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb"
 
@@ -315,10 +315,6 @@ version = "0.5.6"
 deps = ["Base64"]
 uuid = "d6f4376e-aef5-505a-96c1-9c027394607a"
 
-[[MbedTLS_jll]]
-deps = ["Artifacts", "Libdl"]
-uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1"
-
 [[MeshArrays]]
 deps = ["CatViews", "NearestNeighbors", "Pkg", "Printf", "SparseArrays", "Statistics", "Unitful"]
 git-tree-sha1 = "9498dfe472a92e2a6df8fe48728fd0acfbc00689"
@@ -336,9 +332,6 @@ version = "0.4.5"
 [[Mmap]]
 uuid = "a63ad114-7e13-5084-954f-fe012c677804"
 
-[[MozillaCACerts_jll]]
-uuid = "14a3606d-f60d-562e-9121-12d972cd8159"
-
 [[NearestNeighbors]]
 deps = ["Distances", "StaticArrays"]
 git-tree-sha1 = "9afd724797039125e8e2cc362098f01dab60bc3a"
@@ -351,9 +344,6 @@ git-tree-sha1 = "dda7b49694d15d7d1a1ba1d7c2a9142777028bd5"
 uuid = "30363a11-5582-574a-97bb-aa9a979735b9"
 version = "0.10.3"
 
-[[NetworkOptions]]
-uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908"
-
 [[OffsetArrays]]
 deps = ["Adapt"]
 git-tree-sha1 = "b3dfef5f2be7d7eb0e782ba9146a5271ee426e90"
@@ -384,7 +374,7 @@ uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0"
 version = "1.1.0"
 
 [[Pkg]]
-deps = ["Artifacts", "Dates", "Downloads", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"]
+deps = ["Dates", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "UUIDs"]
 uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"
 
 [[PooledArrays]]
@@ -422,7 +412,7 @@ uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc"
 version = "2.4.1"
 
 [[REPL]]
-deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"]
+deps = ["InteractiveUtils", "Markdown", "Sockets"]
 uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb"
 
 [[Random]]
@@ -453,15 +443,15 @@ version = "3.1.14"
 
 [[Rmath]]
 deps = ["Random", "Rmath_jll"]
-git-tree-sha1 = "bf3188feca147ce108c76ad82c2792c57abe7b1f"
+git-tree-sha1 = "86c5647b565873641538d8f812c04e4c9dbeb370"
 uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa"
-version = "0.7.0"
+version = "0.6.1"
 
 [[Rmath_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
-git-tree-sha1 = "68db32dff12bb6127bac73c209881191bf0efbb7"
+git-tree-sha1 = "1b7bf41258f6c5c9c31df8c1ba34c1fc88674957"
 uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f"
-version = "0.3.0+0"
+version = "0.2.2+2"
 
 [[SHA]]
 uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce"
@@ -516,36 +506,28 @@ version = "0.9.7"
 
 [[StructTypes]]
 deps = ["Dates", "UUIDs"]
-git-tree-sha1 = "89b390141d2fb2ef3ac2dc32e336f7a5c4810751"
+git-tree-sha1 = "5eaf731e88587bb72a6c1262c0a014cd1859a08d"
 uuid = "856f2bd8-1eba-4b0a-8007-ebc267875bd4"
-version = "1.5.0"
+version = "1.5.2"
 
 [[SuiteSparse]]
 deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"]
 uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9"
 
-[[TOML]]
-deps = ["Dates"]
-uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76"
-
 [[TableTraits]]
 deps = ["IteratorInterfaceExtensions"]
-git-tree-sha1 = "b1ad568ba658d8cbb3b892ed5380a6f3e781a81e"
+git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39"
 uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c"
-version = "1.0.0"
+version = "1.0.1"
 
 [[Tables]]
 deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "TableTraits", "Test"]
 git-tree-sha1 = "a9ff3dfec713c6677af435d6a6d65f9744feef67"
 uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c"
 version = "1.4.1"
 
-[[Tar]]
-deps = ["ArgTools", "SHA"]
-uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e"
-
 [[Test]]
-deps = ["InteractiveUtils", "Logging", "Random", "Serialization"]
+deps = ["Distributed", "InteractiveUtils", "Logging", "Random"]
 uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
 
 [[TranscodingStreams]]
@@ -568,10 +550,10 @@ uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4"
 uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5"
 
 [[Unitful]]
-deps = ["ConstructionBase", "LinearAlgebra", "Random"]
-git-tree-sha1 = "fdfbea79b5b9a305bf226eb4730321f603281290"
+deps = ["ConstructionBase", "Dates", "LinearAlgebra", "Random"]
+git-tree-sha1 = "c6bbc170505c5ea36593a0072b61d3be8bf868ae"
 uuid = "1986cc42-f94f-5a68-af5c-568840ba703d"
-version = "1.6.0"
+version = "1.7.0"
 
 [[VersionParsing]]
 git-tree-sha1 = "80229be1f670524750d905f8fc8148e5a8c4537f"
@@ -585,13 +567,7 @@ uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6"
 version = "0.5.3"
 
 [[Zlib_jll]]
-deps = ["Libdl"]
+deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
+git-tree-sha1 = "320228915c8debb12cb434c59057290f0834dbf6"
 uuid = "83775a58-1f1d-513f-b197-d71354ab007a"
-
-[[nghttp2_jll]]
-deps = ["Artifacts", "Libdl"]
-uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d"
-
-[[p7zip_jll]]
-deps = ["Artifacts", "Libdl"]
-uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0"
+version = "1.2.11+18"

Project.toml

@@ -4,6 +4,7 @@ authors = ["G Jake Gebbie"]
 version = "0.1.0"
 
 [deps]
+Dierckx = "39dd38d3-220a-591b-8e3c-4c3a8c710a94"
 Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f"
 FFTW = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341"
 Interpolations = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59"

README.md

@@ -18,6 +18,8 @@ from the Julia REPL\
 To verify you are in the project environment, `]` should return `(Reemergence) pkg>`\
 Type backspace to return to command mode.
 
+Using an editor like Atom/Juno of Visual Studio Code, activate the environment on one of the frame panels. The default environment is @v1.x. 
+
 # Running a script (not interactively)
 
 `cd Reemergence.jl`\