diff --git a/environment.yml b/environment.yml index 874b49b9..48abed68 100644 --- a/environment.yml +++ b/environment.yml @@ -1,8 +1,8 @@ name: cabby channels: - pytorch - - anaconda - conda-forge + - anaconda - defaults dependencies: - _libgcc_mutex=0.1=conda_forge @@ -16,6 +16,7 @@ dependencies: - astroid=2.3.3=py37_1 - astropy=4.0.1.post1=py37h8f50634_0 - atomicwrites=1.4.0=pyh9f0ad1d_0 + - attrs=19.3.0=py_0 - autopep8=1.5.3=pyh9f0ad1d_0 - babel=2.8.0=py_0 - backcall=0.2.0=pyh9f0ad1d_0 @@ -41,12 +42,14 @@ dependencies: - ca-certificates=2020.12.5=ha878542_0 - cairo=1.16.0=hcf35c78_1003 - catalogue=1.0.0=py_0 + - certifi=2020.12.5=py37h89c1867_0 - cffi=1.14.1=py37h2b28604_0 - cfitsio=3.470=hce51eda_6 - chardet=3.0.4=py37hc8dfbb8_1006 - charls=2.1.0=he1b5a44_2 - click=7.1.2=pyh9f0ad1d_0 - click-plugins=1.1.1=py_0 + - cligj=0.5.0=py_0 - cloudpickle=1.6.0=py_0 - clyent=1.2.2=py_1 - colorama=0.4.3=py_0 @@ -114,6 +117,7 @@ dependencies: - imageio=2.9.0=py_0 - imagesize=1.2.0=py_0 - importlab=0.5.1=pyh9f0ad1d_0 + - importlib-metadata=1.7.0=py37hc8dfbb8_0 - importlib_metadata=1.7.0=0 - iniconfig=1.0.0=pyh9f0ad1d_0 - intel-openmp=2019.4=243 @@ -134,7 +138,6 @@ dependencies: - json-c=0.13.1=hbfbb72e_1002 - json5=0.9.4=pyh9f0ad1d_0 - jsonschema=3.2.0=py37hc8dfbb8_1 - - jupyter=1.0.0=py_2 - jupyter_client=6.1.6=py_0 - jupyter_console=6.1.0=py_1 - jupyter_core=4.6.3=py37hc8dfbb8_1 @@ -156,7 +159,7 @@ dependencies: - libcblas=3.8.0=17_openblas - libclang=9.0.1=default_hde54327_0 - libcurl=7.71.1=hcdd3856_4 - - libdap4=3.20.4=hd3bb157_0 + - libdap4=3.20.6=h1d1bd15_1 - libedit=3.1.20191231=h46ee950_1 - libev=4.33=h516909a_0 - libffi=3.2.1=he1b5a44_1007 @@ -214,17 +217,13 @@ dependencies: - nbconvert=5.6.1=py37hc8dfbb8_1 - nbformat=5.0.7=py_0 - ncurses=6.2=he1b5a44_1 - - networkx=2.4=py_1 - ninja=1.10.0=hc9558a2_0 - nltk=3.4.4=py_0 - nose=1.3.7=py37hc8dfbb8_1004 - - notebook=6.0.3=py37hc8dfbb8_1 - nspr=4.27=he1b5a44_0 - nss=3.47=he751ad9_0 - numba=0.50.1=py37h0da4684_1 - numexpr=2.7.1=py37h0da4684_1 - - numpy=1.18.5=py37h7130bb8_0 - - numpy-base=1.18.5=py37h2f8d375_0 - numpydoc=1.1.0=pyh9f0ad1d_0 - olefile=0.46=py_0 - openjpeg=2.3.1=h981e76c_3 @@ -233,7 +232,6 @@ dependencies: - osmnx=0.16.2=pyhd3deb0d_0 - owslib=0.20.0=py_0 - packaging=20.4=pyh9f0ad1d_0 - - pandas=1.1.0=py37h3340039_0 - pandoc=2.10.1=h516909a_0 - pandocfilters=1.4.2=py_1 - pango=1.42.4=h7062337_4 @@ -320,10 +318,12 @@ dependencies: - seaborn-base=0.10.1=py_1 - secretstorage=3.1.2=py37hc8dfbb8_1 - send2trash=1.5.0=py_0 + - setuptools=49.2.0=py37hc8dfbb8_0 - shapely=1.7.0=py37hc88ce51_3 - simplegeneric=0.8.1=py_1 - singledispatch=3.4.0.3=py37_1000 - sip=4.19.23=py37h3340039_0 + - six=1.15.0=pyh9f0ad1d_0 - snappy=1.1.8=he1b5a44_3 - snowballstemmer=2.0.0=py_0 - sortedcollections=1.2.1=pyh9f0ad1d_0 @@ -345,7 +345,6 @@ dependencies: - sqlite=3.32.3=hcee41ef_1 - srsly=1.0.2=py37h3340039_0 - statsmodels=0.11.1=py37h8f50634_2 - - swifter=0.305=py37hc8dfbb8_0 - sympy=1.6.1=py37hc8dfbb8_0 - tbb=2020.1=hc9558a2_0 - tblib=1.6.0=py_0 @@ -359,7 +358,6 @@ dependencies: - toml=0.10.1=pyh9f0ad1d_0 - toolz=0.10.0=py_0 - torchvision=0.2.2=py_3 - - tornado=6.0.4=py37h8f50634_1 - tqdm=4.48.0=pyh9f0ad1d_0 - traitlets=4.3.3=py37hc8dfbb8_1 - typed-ast=1.4.1=py37h516909a_0 @@ -399,40 +397,52 @@ dependencies: - zeromq=4.3.2=he1b5a44_2 - zfp=0.5.5=he1b5a44_1 - zict=2.0.0=py_0 + - zipp=3.1.0=py_0 - zlib=1.2.11=h516909a_1006 - zope=1.0=py37_1 - zope.event=4.4=pyh9f0ad1d_0 - zope.interface=5.1.0=py37h8f50634_0 - zstd=1.4.5=h6597ccf_2 - pip: - - attrs==21.2.0 - - boto3==1.18.55 - - botocore==1.21.55 - - certifi==2021.5.30 - - cligj==0.7.2 - - fiona==1.8.20 + - argon2-cffi==20.1.0 + - colorlog==4.7.2 + - datasets==1.5.0 + - dill==0.3.3 + - fiona==1.8.18 - flashtext==2.7 - - flask-wtf==0.15.1 - - geopandas==0.8.0 - - importlib-metadata==4.8.1 - - inflect==5.3.0 - - jmespath==0.10.0 + - furl==2.1.0 + - gensim==4.2.0 + - geopandas==0.8.2 + - huggingface-hub==0.0.6 + - inflect==5.0.2 + - install==1.3.4 + - jupyter==1.0.0 + - libtaxii==1.1.118 + - multiprocess==0.70.11.1 + - nereval==0.2.5 + - networkx==2.6.3 + - node2vec==0.4.3 + - notebook==6.2.0 + - numpy==1.20.0 + - orderedmultidict==1.0.1 + - pandas==1.2.3 + - pyarrow==3.0.0 - pyqt5-sip==4.19.18 - pyqtchart==5.12 - pyqtwebengine==5.12.1 + - rouge==1.0.0 - s2geometry==0.9.0 - - s3transfer==0.5.0 - sacremoses==0.0.43 + - sentencepiece==0.1.95 - seqeval==1.2.2 - - setuptools==58.2.0 - - six==1.16.0 + - smart-open==6.0.0 + - swifter==1.1.3 - termcolor==1.1.0 - tokenizers==0.9.4 - torch==1.7.1 - torchtext==0.8.1 + - tornado==6.1 - transformers==4.1.1 - - typing-extensions==3.10.0.2 - webcolors==1.11.1 - - wtforms==2.3.3 - - zipp==3.6.0 -prefix: /opt/conda/envs/cabby + - xxhash==2.0.0 +prefix: /home/nlp/tzufar/anaconda3/envs/cabby diff --git a/requirements.txt b/requirements.txt index c4317b88..4992d9f6 100644 --- a/requirements.txt +++ b/requirements.txt @@ -3,13 +3,14 @@ alabaster==0.7.12 anaconda-client==1.7.2 anaconda-project==0.8.3 argh @ file:///home/conda/feedstock_root/build_artifacts/argh_1595627874344/work +argon2-cffi==20.1.0 asn1crypto @ file:///home/conda/feedstock_root/build_artifacts/asn1crypto_1595949944546/work astroid==2.3.3 astropy==4.0.1.post1 atomicwrites @ file:///home/conda/feedstock_root/build_artifacts/atomicwrites_1588182545583/work -attrs==21.2.0 +attrs==19.3.0 autopep8 @ file:///home/conda/feedstock_root/build_artifacts/autopep8_1591017828430/work -Babel==2.9.1 +Babel==2.8.0 backcall @ file:///home/conda/feedstock_root/build_artifacts/backcall_1592338393461/work backports.functools-lru-cache==1.6.1 backports.shutil-get-terminal-size==1.0.0 @@ -20,21 +21,20 @@ bleach @ file:///home/conda/feedstock_root/build_artifacts/bleach_1588608214987/ blis==0.4.1 bokeh @ file:///home/conda/feedstock_root/build_artifacts/bokeh_1592869573618/work boto==2.49.0 -boto3==1.18.55 -botocore==1.21.55 Bottleneck==1.3.2 branca @ file:///home/conda/feedstock_root/build_artifacts/branca_1588860304135/work brotlipy==0.7.0 catalogue==1.0.0 -certifi==2021.5.30 +certifi==2020.12.5 cffi @ file:///home/conda/feedstock_root/build_artifacts/cffi_1595805535531/work chardet==3.0.4 click==7.1.2 click-plugins==1.1.1 -cligj==0.7.2 +cligj==0.5.0 cloudpickle @ file:///tmp/build/80754af9/cloudpickle_1598884132938/work clyent==1.2.2 colorama==0.4.3 +colorlog==4.7.2 conda==4.5.12 contextlib2==0.6.0.post1 cryptography @ file:///home/conda/feedstock_root/build_artifacts/cryptography_1595348769214/work @@ -43,10 +43,12 @@ cymem @ file:///home/conda/feedstock_root/build_artifacts/cymem_1591801101611/wo Cython @ file:///home/conda/feedstock_root/build_artifacts/cython_1594253470382/work cytoolz==0.10.1 dask @ file:///home/conda/feedstock_root/build_artifacts/dask-core_1595035454217/work +datasets==1.5.0 decorator==4.4.2 defusedxml==0.6.0 descartes==1.1.0 diff-match-patch @ file:///home/conda/feedstock_root/build_artifacts/diff-match-patch_1594679019945/work +dill==0.3.3 distributed @ file:///home/conda/feedstock_root/build_artifacts/distributed_1602493186453/work docutils==0.16 en-core-web-sm @ file:///home/conda/feedstock_root/build_artifacts/spacy-model-en_core_web_1595437534769/work/sm @@ -54,18 +56,19 @@ entrypoints==0.3 et-xmlfile==1.0.1 fastcache==1.1.0 filelock @ file:///home/conda/feedstock_root/build_artifacts/filelock_1589994591731/work -Fiona==1.8.20 +Fiona==1.8.18 flake8 @ file:///home/conda/feedstock_root/build_artifacts/flake8_1594584774608/work flashtext==2.7 Flask==1.1.2 -Flask-WTF==0.15.1 folium @ file:///home/conda/feedstock_root/build_artifacts/folium_1588861378954/work fsspec==0.7.4 +furl==2.1.0 future==0.18.2 fuzzywuzzy==0.17.0 GDAL==3.0.4 +gensim==4.2.0 geographiclib==1.50 -geopandas==0.8.0 +geopandas==0.8.2 geopy @ file:///home/conda/feedstock_root/build_artifacts/geopy_1593296620954/work gevent @ file:///home/conda/feedstock_root/build_artifacts/gevent_1592657467591/work glob2==0.7 @@ -74,14 +77,16 @@ greenlet @ file:///home/conda/feedstock_root/build_artifacts/greenlet_1591368821 h5py @ file:///home/conda/feedstock_root/build_artifacts/h5py_1595110162077/work HeapDict==1.0.1 html5lib @ file:///home/conda/feedstock_root/build_artifacts/html5lib_1592930327044/work +huggingface-hub==0.0.6 idna @ file:///home/conda/feedstock_root/build_artifacts/idna_1593328102638/work imagecodecs @ file:///home/conda/feedstock_root/build_artifacts/imagecodecs_1593295475914/work imageio @ file:///tmp/build/80754af9/imageio_1594161405741/work imagesize==1.2.0 importlab @ file:///home/conda/feedstock_root/build_artifacts/importlab_1589272355706/work -importlib-metadata==4.8.1 -inflect==5.3.0 +importlib-metadata @ file:///home/conda/feedstock_root/build_artifacts/importlib-metadata_1593211369179/work +inflect==5.0.2 iniconfig @ file:///home/conda/feedstock_root/build_artifacts/iniconfig_1594567149587/work +install==1.3.4 intervaltree==3.0.2 ipykernel @ file:///home/conda/feedstock_root/build_artifacts/ipykernel_1595446871027/work/dist/ipykernel-5.3.4-py3-none-any.whl ipython @ file:///home/conda/feedstock_root/build_artifacts/ipython_1593235460530/work @@ -92,21 +97,22 @@ itsdangerous==1.1.0 jdcal==1.4.1 jedi @ file:///home/conda/feedstock_root/build_artifacts/jedi_1592619900914/work jeepney==0.4.3 -Jinja2==2.11.3 -jmespath==0.10.0 +Jinja2==2.11.2 joblib @ file:///tmp/build/80754af9/joblib_1594236160679/work json5 @ file:///home/conda/feedstock_root/build_artifacts/json5_1591810480056/work jsonschema==3.2.0 +jupyter==1.0.0 jupyter-client @ file:///tmp/build/80754af9/jupyter_client_1594826976318/work jupyter-console==6.1.0 jupyter-core==4.6.3 -jupyterlab==2.2.10 +jupyterlab==2.2.2 jupyterlab-server @ file:///tmp/build/80754af9/jupyterlab_server_1594164409481/work keepalive @ file:///home/conda/feedstock_root/build_artifacts/keepalive_1602289188236/work keyring @ file:///home/conda/feedstock_root/build_artifacts/keyring_1588433935863/work kiwisolver==1.2.0 lazy-object-proxy @ file:///home/conda/feedstock_root/build_artifacts/lazy-object-proxy_1595435532940/work libarchive-c==2.9 +libtaxii==1.1.118 llvmlite==0.33.0 locket==0.2.0 lxml @ file:///home/conda/feedstock_root/build_artifacts/lxml_1594322698782/work @@ -122,24 +128,28 @@ more-itertools==8.4.0 mpmath==1.1.0 msgpack==1.0.0 multipledispatch==0.6.0 +multiprocess==0.70.11.1 munch==2.5.0 murmurhash==1.0.0 nbconvert==5.6.1 nbformat==5.0.7 -networkx @ file:///tmp/build/80754af9/networkx_1594377231366/work -nltk==3.6.6 +nereval==0.2.5 +networkx==2.6.3 +nltk==3.4.4 +node2vec==0.4.3 nose==1.3.7 -notebook @ file:///home/conda/feedstock_root/build_artifacts/notebook_1594078842924/work +notebook==6.2.0 numba @ file:///home/conda/feedstock_root/build_artifacts/numba_1594681180710/work numexpr==2.7.1 -numpy==1.21.0 +numpy==1.20.0 numpydoc @ file:///home/conda/feedstock_root/build_artifacts/numpydoc_1593656006205/work olefile==0.46 openpyxl @ file:///tmp/build/80754af9/openpyxl_1594167385094/work +orderedmultidict==1.0.1 osmnx @ file:///home/conda/feedstock_root/build_artifacts/osmnx_1605657100417/work OWSLib @ file:///tmp/build/80754af9/owslib_1594380045445/work packaging @ file:///home/conda/feedstock_root/build_artifacts/packaging_1589925210001/work -pandas @ file:///home/conda/feedstock_root/build_artifacts/pandas_1595958445836/work +pandas==1.2.3 pandocfilters==1.4.2 parso==0.7.0 partd==1.1.0 @@ -161,6 +171,7 @@ prompt-toolkit @ file:///home/conda/feedstock_root/build_artifacts/prompt-toolki psutil @ file:///home/conda/feedstock_root/build_artifacts/psutil_1594826921622/work ptyprocess==0.6.0 py @ file:///home/conda/feedstock_root/build_artifacts/py_1593088446458/work +pyarrow==3.0.0 pycodestyle @ file:///home/conda/feedstock_root/build_artifacts/pycodestyle_1589305246696/work pycosat==0.6.3 pycparser @ file:///home/conda/feedstock_root/build_artifacts/pycparser_1593275161868/work @@ -169,7 +180,7 @@ pycurl==7.43.0.5 pydocstyle @ file:///tmp/build/80754af9/pydocstyle_1592848020240/work pyepsg==0.4.0 pyflakes==2.2.0 -Pygments==2.7.4 +Pygments==2.6.1 pylint==2.3.1 pyodbc==4.0.30 pyOpenSSL @ file:///tmp/build/80754af9/pyopenssl_1594392929924/work @@ -191,7 +202,7 @@ pytype @ file:///home/conda/feedstock_root/build_artifacts/pytype_1596199254078/ pytz==2020.1 PyWavelets==1.1.1 pyxdg==0.26 -PyYAML==5.4 +PyYAML==5.3.1 pyzmq==19.0.1 QDarkStyle==2.8.1 QtAwesome @ file:///home/conda/feedstock_root/build_artifacts/qtawesome_1588715536397/work @@ -200,22 +211,24 @@ QtPy==1.9.0 regex @ file:///home/conda/feedstock_root/build_artifacts/regex_1594799371287/work requests @ file:///home/conda/feedstock_root/build_artifacts/requests_1592425495151/work rope @ file:///home/conda/feedstock_root/build_artifacts/rope_1588950285934/work +rouge==1.0.0 Rtree==0.9.4 ruamel-yaml==0.15.80 s2geometry==0.9.0 -s3transfer==0.5.0 sacremoses==0.0.43 scikit-learn @ file:///home/conda/feedstock_root/build_artifacts/scikit-learn_1589920855303/work scipy @ file:///home/conda/feedstock_root/build_artifacts/scipy_1595583586868/work seaborn @ file:///home/conda/feedstock_root/build_artifacts/seaborn-base_1591878760859/work SecretStorage==3.1.2 Send2Trash==1.5.0 +sentencepiece==0.1.95 seqeval==1.2.2 Shapely==1.7.0 simplegeneric==0.8.1 singledispatch==3.4.0.3 sip==4.19.23 -six==1.16.0 +six @ file:///home/conda/feedstock_root/build_artifacts/six_1590081179328/work +smart-open==6.0.0 snowballstemmer==2.0.0 sortedcollections @ file:///home/conda/feedstock_root/build_artifacts/sortedcollections_1591583091437/work sortedcontainers @ file:///home/conda/feedstock_root/build_artifacts/sortedcontainers_1591999956871/work @@ -233,7 +246,7 @@ sphinxcontrib-websupport @ file:///home/conda/feedstock_root/build_artifacts/sph SQLAlchemy @ file:///home/conda/feedstock_root/build_artifacts/sqlalchemy_1593116989295/work srsly @ file:///home/conda/feedstock_root/build_artifacts/srsly_1589222431475/work statsmodels @ file:///home/conda/feedstock_root/build_artifacts/statsmodels_1591963256838/work -swifter @ file:///home/conda/feedstock_root/build_artifacts/swifter_1592083914749/work +swifter==1.1.3 sympy @ file:///home/conda/feedstock_root/build_artifacts/sympy_1593716797971/work tables==3.6.1 tblib==1.6.0 @@ -249,12 +262,12 @@ toolz==0.10.0 torch==1.7.1 torchtext==0.8.1 torchvision==0.2.2 -tornado==6.0.4 +tornado==6.1 tqdm @ file:///home/conda/feedstock_root/build_artifacts/tqdm_1594937875116/work traitlets==4.3.3 transformers==4.1.1 typed-ast==1.4.1 -typing-extensions==3.10.0.2 +typing-extensions @ file:///tmp/build/80754af9/typing_extensions_1592847887441/work ujson==1.35 unicodecsv==0.14.1 urllib3 @ file:///tmp/build/80754af9/urllib3_1597086586889/work @@ -266,13 +279,13 @@ webencodings==0.5.1 Werkzeug==1.0.1 widgetsnbextension @ file:///home/conda/feedstock_root/build_artifacts/widgetsnbextension_1594164347302/work wrapt==1.12.1 -WTForms==2.3.3 wurlitzer==2.0.0 xlrd @ file:///home/conda/feedstock_root/build_artifacts/xlrd_1595712200082/work XlsxWriter @ file:///home/conda/feedstock_root/build_artifacts/xlsxwriter_1596074457340/work xlwt==1.3.0 +xxhash==2.0.0 yapf @ file:///home/conda/feedstock_root/build_artifacts/yapf_1595950469082/work zict==2.0.0 -zipp==3.6.0 +zipp==3.1.0 zope.event @ file:///home/conda/feedstock_root/build_artifacts/zope.event_1591372894284/work zope.interface==5.1.0