This page lists the publications of the research group.
| Date | Authors | Publication Title | Tags | Published In | Journal IF | Status | DOI |
|---|---|---|---|---|---|---|---|
| 2026 | |||||||
| 2026 |
| Date | Authors | Publication Title | Tags | Published In | Journal IF | Status | DOI |
|---|---|---|---|---|---|---|---|
| 2025 | Gomes, V. M. S. et al. | RND/HAE-1 members in the Pseudomonadota phylum: exploring multidrug resistance | Multidrug resistance; Pseudomonadota | Biophysical Reviews | Published | doi | |
| 2025 | Nunes, C. B. et al. | PseudoResistance DB: A new Database of antibiotics related to Pseudomonas aeruginosa antibiotic resistance | Antibiotic resistance; Database | Latin American Data in Science | Published | doi | |
| 2025 | Bulla, A. C. S. et al. | Computational Methods in Immunoinformatics: Epitope Discovery and Diagnostic Applications | Immunoinformatics; Epitope discovery | ACS Omega | Published | doi | |
| 2025 | Rosa, R. S. L. et al. | Impact of Structural Relaxation on Protein-Protein Docking in Large Macromolecular Complexes | Protein-protein docking; Structural relaxation | Applied Biosciences | Published | doi | |
| 2025 | Rosa, R. S. L. et al. | Atomistic Insights into gp82 Binding: A Microsecond, Million-Atom Exploration of Host-Cell Invasion | Molecular dynamics; Host-cell invasion | Biochemistry | Published | doi |
| Date | Authors | Publication Title | Tags | Published In | Journal IF | Status | DOI |
|---|---|---|---|---|---|---|---|
| 2024 | Cheohen, C. F. A. R. et al. | In silico Analysis of Natural Products from Brazilian Biodiversity in COVID-19 Treatment: NuBBE Database against SARS-CoV-2 Papain-Like Protease | Natural products; SARS-CoV-2 | Journal of the Brazilian Chemical Society | Published | doi | |
| 2024 | Silva, T. O. et al. | Bacterial efflux pump OMPs as vaccine candidates against Multidrug-Resistant Gram-negative bacteria | Vaccine candidates; Efflux pumps | Journal of Leukocyte Biology | Published | doi | |
| 2024 | Mendonça, S. C. et al. | Myrtucommulones and Related Acylphloroglucinols from Myrtaceae as a Promising Source of Multitarget SARS-CoV-2 Cycle Inhibitors | SARS-CoV-2; Natural products | Pharmaceuticals | Published | doi | |
| 2024 | Silva, T. O. et al. | The Escherichia coli TolC efflux pump protein is immunogenic and elicits protective antibodies | Efflux pump; Immunogenicity | Journal of Leukocyte Biology | Published | doi | |
| 2024 | Dias, M. F. R. et al. | Application of PolyPRep tools on HIV protease polyproteins using molecular docking | HIV protease; Molecular docking | Brazilian Journal of Biology (Online) | Published | doi |
| Date | Authors | Publication Title | Tags | Published In | Journal IF | Status | DOI |
|---|---|---|---|---|---|---|---|
| 2023 | Dias, M. F. R. et al. | Genomic surveillance and sequencing of SARS-CoV-2 across South America | Genomic surveillance; SARS-CoV-2 | Revista Panamericana de Salud Pública | Published | doi | |
| 2023 | Cheohen, C. F. A. R. et al. | In silico screening of phenylethanoid glycosides, a class of pharmacologically active compounds as natural inhibitors of SARS-CoV-2 proteases | SARS-CoV-2; Screening | Computational and Structural Biotechnology Journal | Published | doi | |
| 2023 | Sousa, G. F. et al. | Immunoglobulin A as a Key Immunological Molecular Signature of Post-COVID-19 Conditions | Immunology; Post-COVID-19 | Viruses-Basel | Published | doi | |
| 2023 | Gonzalez, M. S. P. et al. | Development of a Database of Peptides with Potential for Pharmacological Intervention in Human Pathogen Molecular Targets | Database; Peptides | Latin American Data in Science | Published | doi | |
| 2023 | Felix, N. P. et al. | Development and Characterization of an In Silico Database of In Vitro Tested Antiviral Compounds | Database; Antiviral compounds | Latin American Data in Science | Published | doi |
| Date | Authors | Publication Title | Tags | Published In | Journal IF | Status | DOI |
|---|---|---|---|---|---|---|---|
| 2022 | Cheohen, C. F. A. R. et al. | Database of Active Pharmaceutical Ingredients (APIs) present in the Brazilian Pharmacopeia | Database; APIs | Latin American Data in Science | Published | doi | |
| 2022 | Pozzobon, A. P. B. et al. | Schools reopening and the COVID-19 pandemic: a case study from Macaé, Rio de Janeiro, Brazil | COVID-19; Public health | Anais da Academia Brasileira de Ciências | Published | doi | |
| 2022 | Da-Costa-Rodrigues, B. et al. | SARS-CoV-2 Spatiotemporal Genomic and Molecular Analysis of the First Wave of the COVID-19 Pandemic in Macaé, the Brazilian Capital of Oil | SARS-CoV-2; Genomic analysis | International Journal of Molecular Sciences | Published | doi | |
| 2022 | Dias, M. F. R. et al. | Vigilância em Saúde: a importância da padronização de dados para controle da pandemia da COVID-19 | Public health; Data standardization | Boletim Ciência Macaé | Published | ||
| 2022 | Dante, A. et al. | Development of an Escherichia coli optical biosensor with computational validation | Biosensor; Computational validation | Journal of Physics: Conference Series | Published | doi |
| Date | Authors | Publication Title | Tags | Published In | Journal IF | Status | DOI |
|---|---|---|---|---|---|---|---|
| 2021 | Sarcinelli, M. A. et al. | The pulmonary route as a way to drug repositioning in COVID-19 therapy | Drug repositioning; COVID-19 | Journal of Drug Delivery Science and Technology | Published | doi | |
| 2021 | Leal, C. M. et al. | Flavonoids from Siparuna cristata as Potential Inhibitors of SARS-CoV-2 Replication | SARS-CoV-2; Flavonoids | Brazilian Journal of Pharmacognosy | Published | doi | |
| 2021 | Feitosa, N. M. et al. | Molecular testing and analysis of disease spreading during the emergence of COVID-19 in Macaé, the Brazilian National Capital of Oil | COVID-19; Molecular testing | Scientific Reports | Published | doi | |
| 2021 | Oliveira, F. L. L. et al. | PolyPRep: A Simple Tool for Fragmentation and Modelling 3D Structures of the Unresolved Polyproteins | Molecular modeling; Polyproteins | International Journal of Biomedical Data Mining | Published |
| Date | Authors | Publication Title | Tags | Published In | Journal IF | Status | DOI |
|---|---|---|---|---|---|---|---|
| 2020 | Da Silva, M. L. et al. | Experiências de divulgação científica e letramento científico sobre moléculas durante a pandemia da Covid-19 | Science communication; Scientific literacy | Raízes e Rumos | Published |
| Date | Authors | Publication Title | Tags | Published In | Journal IF | Status | DOI |
|---|---|---|---|---|---|---|---|
| 2019 | Freitas, C. S. et al. | Encrypted antimicrobial and antitumoral peptides recovered from a protein-rich soybean (Glycine max) by-product | Antimicrobial peptides; Antitumoral peptides | Journal of Functional Foods | Published | doi | |
| 2019 | Silva, E. et al. | Dengue virus nonstructural 3 protein interacts directly with human glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and reduces its glycolytic activity | Dengue virus; GAPDH | Scientific Reports | Published | doi | |
| 2019 | Zappala, R. V. L. et al. | The “Black Box” Genome of the extremophilic bacterium Deinococcus radiodurans turning grayish | Genome; Extremophile | Memorie della Societa Astronomica Italiana (Online) | Published | doi |
| Date | Authors | Publication Title | Tags | Published In | Journal IF | Status | DOI |
|---|---|---|---|---|---|---|---|
| 2016 | Torres, P. H. M. et al. | Alternative Model for RND-Type Efflux Pump | Efflux pump; RND-type | Journal of the Brazilian Chemical Society (Online) | Published | doi | |
| 2016 | Soares, R. O. et al. | Unraveling HIV Protease Flaps Dynamics by Constant pH Molecular Dynamics Simulations | HIV protease; Constant pH MD | Journal of Structural Biology (Print) | Published | doi | |
| 2016 | Soares, R. O. et al. | Dataset showing the Impact of the Protonation States on Molecular Dynamics of HIV protease | HIV protease; Dataset | Data in Brief | Published | doi | |
| 2016 | Dias, M. F. R. et al. | Machine Learning and Applications in Bioinformatics | Machine learning; Bioinformatics | Semioses (Rio de Janeiro) | Published |
| Date | Authors | Publication Title | Tags | Published In | Journal IF | Status | DOI |
|---|---|---|---|---|---|---|---|
| 2015 | Allonso, D. et al. | Dengue Virus NS1 Protein Modulates Cellular Energy Metabolism by Increasing Glyceraldehyde-3-Phosphate Dehydrogenase Activity | Dengue virus; NS1 | Journal of Virology (Print) | Published | doi |
| Date | Authors | Publication Title | Tags | Published In | Journal IF | Status | DOI |
|---|---|---|---|---|---|---|---|
| 2014 | Ribeiro, J. M. C. et al. | An Insight into the Transcriptome of the Digestive Tract of the Bloodsucking Bug, Rhodnius prolixus | Transcriptome; Insect physiology | PLoS Neglected Tropical Diseases (Online) | Published | doi |
| Date | Authors | Publication Title | Tags | Published In | Journal IF | Status | DOI |
|---|---|---|---|---|---|---|---|
| 2013 | Verissimo da Costa, G. C. et al. | The identification and characterization of epitopes in the 30-34kDa Trypanosoma cruzi proteins recognized by antibodies in the serum samples of chagasic patients | Epitope mapping; Trypanosoma cruzi | Journal of Proteomics (Print) | Published | doi |
| Date | Authors | Publication Title | Tags | Published In | Journal IF | Status | DOI |
|---|---|---|---|---|---|---|---|
| 2012 | Campos, R. A. et al. | Gene expression and molecular modeling of the HSP104 chaperone of Trypanosoma cruzi | Gene expression; Molecular modeling | Genetics and Molecular Research | Published | doi |
| Date | Authors | Publication Title | Tags | Published In | Journal IF | Status | DOI |
|---|---|---|---|---|---|---|---|
| 2011 | Parente, T. E. M. et al. | Structural features of cytochrome P450 1A associated with the absence of EROD activity in liver of the loricariid catfish Pterygoplichthys sp. | Cytochrome P450; Fish physiology | Gene (Amsterdam) | Published | doi |
| Date | Authors | Publication Title | Tags | Published In | Journal IF | Status | DOI |
|---|---|---|---|---|---|---|---|
| 2010 | da Silva, M. L. et al. | Design, docking studies and molecular dynamics of new potential selective inhibitors of Plasmodium falciparum serine hydroxymethyltransferase | Antimalarial; Docking; Molecular dynamics | Molecular Simulation | Published | doi |