diff --git a/package-lock.json b/package-lock.json
index ad0f960..4751085 100644
--- a/package-lock.json
+++ b/package-lock.json
@@ -12,10 +12,15 @@
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"@astrojs/starlight-tailwind": "^2.0.3",
"@astrojs/tailwind": "^5.1.2",
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"astro": "^4.14.5",
+ "date-fns": "^4.1.0",
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"sharp": "^0.33.5",
"tailwindcss": "^3.4.15",
- "typescript": "^5.5.4"
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+ "xml-js": "^1.6.11"
}
},
"node_modules/@alloc/quick-lru": {
@@ -602,6 +607,50 @@
"node": ">=14"
}
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+ "ws": "^8.18.0"
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"node_modules/@emmetio/abbreviation": {
"version": "2.3.3",
"resolved": "https://registry.npmjs.org/@emmetio/abbreviation/-/abbreviation-2.3.3.tgz",
@@ -1667,6 +1716,313 @@
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+ "resolved": "https://registry.npmjs.org/detect-libc/-/detect-libc-1.0.3.tgz",
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"license": "ISC"
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@@ -2319,6 +2781,15 @@
"url": "https://github.com/sponsors/wooorm"
}
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"resolved": "https://registry.npmjs.org/astring/-/astring-1.9.0.tgz",
@@ -2643,6 +3114,15 @@
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@@ -2694,6 +3174,22 @@
"url": "https://github.com/sponsors/wooorm"
}
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+ "optional": true
+ }
+ }
+ },
"node_modules/volar-service-css": {
"version": "0.0.61",
"resolved": "https://registry.npmjs.org/volar-service-css/-/volar-service-css-0.0.61.tgz",
@@ -8071,6 +8857,22 @@
"node": ">=4"
}
},
+ "node_modules/why-is-node-running": {
+ "version": "2.3.0",
+ "resolved": "https://registry.npmjs.org/why-is-node-running/-/why-is-node-running-2.3.0.tgz",
+ "integrity": "sha512-hUrmaWBdVDcxvYqnyh09zunKzROWjbZTiNy8dBEjkS7ehEDQibXJ7XvlmtbwuTclUiIyN+CyXQD4Vmko8fNm8w==",
+ "license": "MIT",
+ "dependencies": {
+ "siginfo": "^2.0.0",
+ "stackback": "0.0.2"
+ },
+ "bin": {
+ "why-is-node-running": "cli.js"
+ },
+ "engines": {
+ "node": ">=8"
+ }
+ },
"node_modules/widest-line": {
"version": "4.0.1",
"resolved": "https://registry.npmjs.org/widest-line/-/widest-line-4.0.1.tgz",
@@ -8253,6 +9055,39 @@
"url": "https://github.com/sponsors/sindresorhus"
}
},
+ "node_modules/ws": {
+ "version": "8.18.0",
+ "resolved": "https://registry.npmjs.org/ws/-/ws-8.18.0.tgz",
+ "integrity": "sha512-8VbfWfHLbbwu3+N6OKsOMpBdT4kXPDDB9cJk2bJ6mh9ucxdlnNvH1e+roYkKmN9Nxw2yjz7VzeO9oOz2zJ04Pw==",
+ "license": "MIT",
+ "engines": {
+ "node": ">=10.0.0"
+ },
+ "peerDependencies": {
+ "bufferutil": "^4.0.1",
+ "utf-8-validate": ">=5.0.2"
+ },
+ "peerDependenciesMeta": {
+ "bufferutil": {
+ "optional": true
+ },
+ "utf-8-validate": {
+ "optional": true
+ }
+ }
+ },
+ "node_modules/xml-js": {
+ "version": "1.6.11",
+ "resolved": "https://registry.npmjs.org/xml-js/-/xml-js-1.6.11.tgz",
+ "integrity": "sha512-7rVi2KMfwfWFl+GpPg6m80IVMWXLRjO+PxTq7V2CDhoGak0wzYzFgUY2m4XJ47OGdXd8eLE8EmwfAmdjw7lC1g==",
+ "license": "MIT",
+ "dependencies": {
+ "sax": "^1.2.4"
+ },
+ "bin": {
+ "xml-js": "bin/cli.js"
+ }
+ },
"node_modules/xxhash-wasm": {
"version": "1.0.2",
"resolved": "https://registry.npmjs.org/xxhash-wasm/-/xxhash-wasm-1.0.2.tgz",
diff --git a/package.json b/package.json
index 3bb60f5..afafa3a 100644
--- a/package.json
+++ b/package.json
@@ -7,16 +7,22 @@
"start": "astro dev",
"build": "astro check && astro build",
"preview": "astro preview",
- "astro": "astro"
+ "astro": "astro",
+ "test": "vitest"
},
"dependencies": {
"@astrojs/check": "^0.9.3",
"@astrojs/starlight": "^0.26.1",
"@astrojs/starlight-tailwind": "^2.0.3",
"@astrojs/tailwind": "^5.1.2",
+ "@effect/platform-node": "^0.65.0",
"astro": "^4.14.5",
+ "date-fns": "^4.1.0",
+ "effect": "^3.11.0",
"sharp": "^0.33.5",
"tailwindcss": "^3.4.15",
- "typescript": "^5.5.4"
+ "typescript": "^5.5.4",
+ "vitest": "^2.1.7",
+ "xml-js": "^1.6.11"
}
}
diff --git a/src/components/GrArxivPage.astro b/src/components/GrArxivPage.astro
new file mode 100644
index 0000000..43d20ae
--- /dev/null
+++ b/src/components/GrArxivPage.astro
@@ -0,0 +1,82 @@
+
+---
+import { format } from 'date-fns';
+
+import {extractArxivID, getPaper} from '../lib/arxiv'
+
+import StarlightPage from '@astrojs/starlight/components/StarlightPage.astro';
+
+const props = Astro.props;
+
+const arxivEntry = props.arxiv
+
+const arxivid = extractArxivID(arxivEntry.id)
+
+const paper = getPaper(arxivid)
+
+---
+
+
+
+
By
+ {arxivEntry.author.map( (author:any, i:number) => (
+ {(i ? ', ' : '')}{author.name}
+ ))}
+
+
+ arXiv:{arxivid}
+ [ {arxivEntry.category.join(", ")}
+ ]
+
+
+ {paper?.github !== undefined && paper.github !== "" ?
+ (github:{paper?.github})
+ : ''
+ }
+
+
+
+
+ Abstract
+ {arxivEntry.summary}
+
+
+
+
+
+
diff --git a/src/content/config.ts b/src/content/config.ts
index 45f60b0..700ce7d 100644
--- a/src/content/config.ts
+++ b/src/content/config.ts
@@ -1,6 +1,15 @@
-import { defineCollection } from 'astro:content';
+import { z, defineCollection } from 'astro:content';
import { docsSchema } from '@astrojs/starlight/schema';
+const researchCollection = defineCollection({
+ type: 'data',
+ schema: z.object({
+ title: z.string(),
+ canonicalURL: z.string().url()
+ })
+})
+
export const collections = {
docs: defineCollection({ schema: docsSchema() }),
+ research: researchCollection
};
diff --git a/src/content/docs/appendices/notation.md b/src/content/docs/appendices/notation.md
index f8774a7..308a929 100644
--- a/src/content/docs/appendices/notation.md
+++ b/src/content/docs/appendices/notation.md
@@ -12,11 +12,11 @@ The GraphRAG pattern catalog uses a data notation called `gram` to describe
logical graph structures called patterns that are composed of nodes, relationships
and subjects.
-The Gram notation is intended to be self-descriptive and explicit, able to
-represent data and structures that are often implicit in a physical graph models.
-For example, paths are present in any connected graph, however storing path-level
-information isn't normally supported. You can find paths, even store paths, but
-there is no way to "say something" about a path.
+> The Gram notation is intended to be self-descriptive and explicit, able to
+> represent data and structures that are often implicit in a physical graph models.
+> For example, paths are present in any connected graph, however storing path-level
+> information isn't normally supported. You can find paths, even store paths, but
+> there is no way to "say something" about a path.
Gram starts with a notion of "subjects" as a self-describing data structure
in two parts:
diff --git a/src/content/docs/appendices/research.mdx b/src/content/docs/appendices/research.mdx
index 936b32e..0b5e8a8 100644
--- a/src/content/docs/appendices/research.mdx
+++ b/src/content/docs/appendices/research.mdx
@@ -1,6 +1,8 @@
---
title: GraphRAG Papers
description: Foundational research papers about GraphRAG and Knowledge Graphs
+editUrl: false
+tableOfContents: false
---
- [Graph Retrieval-Augmented Generation: A Survey](https://arxiv.org/abs/2408.08921)
diff --git a/src/data/papers.json b/src/data/papers.json
new file mode 100644
index 0000000..ab15a31
--- /dev/null
+++ b/src/data/papers.json
@@ -0,0 +1,86 @@
+[
+ {
+ "arxivid": "2408.08921",
+ "github": "pengboci/GraphRAG-Survey"
+ },
+ {
+ "arxivid": "2312.16890",
+ "github": "HKUDS/DiffKG"
+ },
+ {
+ "arxivid": "2306.08302",
+ "github": ""
+ },
+ {
+ "arxivid": "2310.04560",
+ "github": "google-research/talk-like-a-graph"
+ },
+ {
+ "arxivid": "2311.07509",
+ "github": "datadotworld/cwd-benchmark-data"
+ },
+ {
+ "arxivid": "2402.07630",
+ "github": "XiaoxinHe/G-Retriever"
+ },
+ {
+ "arxivid": "2404.12491",
+ "github": "urchade/GraphER"
+ },
+ {
+ "arxivid": "2404.16130",
+ "github": "microsoft/graphrag"
+ },
+ {
+ "arxivid": "2404.17723",
+ "github": ""
+ },
+ {
+ "arxivid": "2408.04948",
+ "github": ""
+ },
+ {
+ "arxivid": "2406.14550",
+ "github": ""
+ },
+ {
+ "arxivid": "2410.05779",
+ "github": "HKUDS/LightRAG"
+ },
+ {
+ "arxivid": "2410.08815",
+ "github": "Li-Z-Q/StructRAG"
+ },
+ {
+ "arxivid": "2307.07697",
+ "github": "IDEA-FinAI/ToG"
+ },
+ {
+ "arxivid": "2405.14831",
+ "github": "OSU-NLP-Group/HippoRAG"
+ },
+ {
+ "arxivid": "2408.04187",
+ "github": "MedicineToken/Medical-Graph-RAG"
+ },
+ {
+ "arxivid": "2405.18414",
+ "github": ""
+ },
+ {
+ "arxivid": "2405.16506",
+ "github": "HuieL/GRAG"
+ },
+ {
+ "arxivid": "2410.23875",
+ "github": "liyichen-cly/PoG"
+ },
+ {
+ "arxivid": "2410.18415",
+ "github": ""
+ },
+ {
+ "arxivid": "2404.07103",
+ "github": "PeterGriffinJin/Graph-CoT"
+ }
+]
\ No newline at end of file
diff --git a/src/lib/arxiv.spec.ts b/src/lib/arxiv.spec.ts
new file mode 100644
index 0000000..0a97d7a
--- /dev/null
+++ b/src/lib/arxiv.spec.ts
@@ -0,0 +1,48 @@
+import { assert, expect, test } from 'vitest';
+
+import { Effect, Either } from "effect"
+import { FetchHttpClient } from "@effect/platform"
+
+import { getArxivDetails } from './arxiv'
+import { type ArxivEntry } from './arxiv'
+
+test('arxiv fetch well-known entry', async () => {
+ const arxivid = '2402.07630';
+
+ const program = getArxivDetails(arxivid).pipe(
+ Effect.scoped,
+ Effect.provide(FetchHttpClient.layer) // provide a real implementation of fetch()
+ );
+
+ const result = await Effect.runPromise(program)
+
+ expect(Either.isRight(result))
+
+ expect(Either.getOrThrow(result).title).toBe("G-Retriever: Retrieval-Augmented Generation for Textual Graph Understanding and Question Answering")
+
+ // DEBUG
+ // Either.match(result,
+ // {
+ // onLeft: (e) => console.error(e),
+ // onRight: (result) => console.log(result.feed.entry[0])
+ // }
+ // )
+
+});
+
+test('arxiv get many entries', async () => {
+ const arxivids = ['2402.07630', '2311.07509', '2306.08302'];
+
+ const program = Effect.forEach(arxivids, (arxivid) =>
+ getArxivDetails(arxivid)
+ ).pipe(
+ Effect.map( Either.all ), // gather all the successes into one array
+ Effect.scoped,
+ Effect.provide(FetchHttpClient.layer)
+ )
+
+ const result = await Effect.runPromise(program)
+
+ expect(Either.isRight(result))
+
+})
\ No newline at end of file
diff --git a/src/lib/arxiv.ts b/src/lib/arxiv.ts
new file mode 100644
index 0000000..9e8d50c
--- /dev/null
+++ b/src/lib/arxiv.ts
@@ -0,0 +1,112 @@
+import {
+ HttpClient,
+ HttpClientRequest,
+ HttpClientResponse,
+ HttpClientError
+} from "@effect/platform"
+import type { Cause } from "effect"
+import { Effect, Either } from "effect"
+import * as convert from 'xml-js';
+
+import { Schema } from "effect"
+import type { ParseError } from "effect/ParseResult";
+import type { ParseOptions } from "effect/SchemaAST";
+
+import papers from '../data/papers.json';
+
+const XmlText = Schema.transform(
+ Schema.Struct({text:Schema.String}),
+ Schema.String,
+ {
+ strict: true,
+ decode: (element) => element.text,
+ encode: (s) => ({ text: s })
+ }
+)
+
+const XmlTextDate = Schema.transform(
+ Schema.Struct({text:Schema.String}),
+ Schema.Date,
+ {
+ strict: true,
+ decode: (element) => element.text,
+ encode: (d) => ({ text: d })
+ }
+)
+
+const ArxivLink = Schema.Struct({
+ href: Schema.String,
+ rel: Schema.String,
+ type: Schema.optional(Schema.String)
+})
+
+const XmlLink = Schema.transform(
+ Schema.Struct({
+ _attributes: ArxivLink
+ }),
+ ArxivLink,
+ {
+ strict: true,
+ decode: (element) => element._attributes,
+ encode: (attrs) => ({ _attributes: attrs })
+ }
+)
+
+const XmlCategory = Schema.transform(
+ Schema.Struct({
+ _attributes: Schema.Struct({ term: Schema.String })
+ }),
+ Schema.String,
+ {
+ strict: true,
+ decode: (element) => element._attributes.term,
+ encode: (category) => ({_attributes: { term: category, scheme: ""}})
+ }
+)
+
+export const ArxivEntry = Schema.Struct({
+ id: XmlText,
+ updated: XmlTextDate,
+ published: XmlTextDate,
+ title: XmlText,
+ summary: XmlText,
+ author: Schema.Array(
+ Schema.Struct({
+ name: XmlText
+ })
+ ),
+ link: Schema.Array(XmlLink),
+ category: Schema.Array(XmlCategory)
+})
+
+export type ArxivEntry = Schema.Schema.Type
+
+export const ArxivFeed = Schema.Struct({
+ feed: Schema.Struct({
+ entry: Schema.Array(ArxivEntry)
+ })
+})
+
+export type ArxivFeed = Schema.Schema.Type
+
+const decodeArxivFeed = Schema.decodeUnknownEither(ArxivFeed)
+
+export const getArxivDetails = (
+ arxivid: string
+) =>
+ HttpClient.get(`http://export.arxiv.org/api/query?id_list=${arxivid}`).pipe(
+ Effect.flatMap( (response) => response.text),
+ Effect.map( xml => convert.xml2js(xml, {compact:true, textKey:"text", alwaysArray:["entry","author", "category"]})),
+ // Effect.tap( raw => Effect.log(raw)),
+ Effect.map(decodeArxivFeed),
+ Effect.map(Either.map( r => r.feed.entry[0]))
+ )
+
+ export const extractArxivID = (url:string) => {
+ const arxividRE = /.+\/([0-9\.]+)/g;
+ const matches = arxividRE.exec(url);
+ return (matches !== null) ? matches[1] : '.'
+ }
+
+export const getPaper = (paper:string) => papers.find( p => (p.arxivid === paper))
+
diff --git a/src/pages/appendices/research.astro b/src/pages/appendices/research.astro
new file mode 100644
index 0000000..3dc1ef8
--- /dev/null
+++ b/src/pages/appendices/research.astro
@@ -0,0 +1,42 @@
+---
+import { Effect, Either } from "effect"
+import { FetchHttpClient } from "@effect/platform"
+
+import { getArxivDetails, extractArxivID } from '../../lib/arxiv'
+import type {ArxivEntry} from '../../lib/arxiv'
+
+import StarlightPage from '@astrojs/starlight/components/StarlightPage.astro';
+
+import papers from '../../data/papers.json';
+
+const arxivids = papers.map(p => p.arxivid)
+
+const program = Effect.forEach(arxivids, (arxivid) =>
+ getArxivDetails(arxivid)
+).pipe(
+ Effect.map( Either.all ), // gather all the successes into one array
+ Effect.scoped,
+ Effect.provide(FetchHttpClient.layer)
+)
+
+const results = await Effect.runPromise(program)
+
+const sorted = Either.getOrElse(results,
+ () => ([])
+).sort((a:any,b:any) => (a.published.text < b.published.text) ? -1 : 1);
+
+---
+
+
+
+
+
\ No newline at end of file
diff --git a/src/pages/appendices/research/[paper].astro b/src/pages/appendices/research/[paper].astro
new file mode 100644
index 0000000..a074e28
--- /dev/null
+++ b/src/pages/appendices/research/[paper].astro
@@ -0,0 +1,36 @@
+---
+
+import { Effect, Either } from "effect"
+import { FetchHttpClient } from "@effect/platform"
+
+import { getArxivDetails } from '../../../lib/arxiv'
+
+import papers from '../../../data/papers.json';
+import GrArxivPage from "../../../components/GrArxivPage.astro";
+
+export function getStaticPaths() {
+ return papers.map(p => ({params: {paper: p.arxivid}}))
+}
+
+const { paper:arxivid } = Astro.params;
+
+const fetchPaper = getArxivDetails(arxivid).pipe(
+ Effect.scoped,
+ Effect.provide(FetchHttpClient.layer)
+ );
+
+const fetchedEntry = await Effect.runPromise(fetchPaper)
+
+---
+
+{
+ Either.match(fetchedEntry, {
+ onLeft: (error) => (
+
+
Failed to fetch {arxivid}
+
{error.message}
+