Adjust style

Author: bgyori

gilda/app/app.py

@@ -9,7 +9,6 @@
 from gilda import __version__ as version
 from gilda.grounder import GrounderInput, Grounder
 from gilda.app.proxies import grounder
-from gilda.ner import annotate
 
 # NOTE: the Flask REST-X API has to be declared here, below the home endpoint
 # otherwise it reserves the / base path.

gilda/app/templates/base.html

@@ -37,10 +37,10 @@ <h2 style="margin-top: 10px; margin-bottom: 10px;">Gilda Grounding
                     (also called <i>named entity recognition</i>).
                 </p>
                 <ul>
-                    <li>In the <i>grounding</i> mode, the input text is assumed to
+                    <li>In the <i>Grounding</i> mode, the input text is assumed to
                         correspond to a single named entity.
                     </li>
-                    <li>In the <i>annotation</i> mode, a longer span of text is used as
+                    <li>In the <i>Annotation</i> mode, a longer span of text is used as
                         input which may contain any number of named entities in it.
                     </li>
                 </ul>
@@ -71,8 +71,7 @@ <h2 style="margin-top: 10px; margin-bottom: 10px;">Gilda Grounding
                 Gilda is developed by the
                 <a href="https://gyorilab.github.io" target="_blank">Gyori Lab for Computational Biomedicine</a>
                 at <a href="https://www.northeastern.edu" target="_blank">Northeastern University</a>.
-                Its development is funded by DARPA grants W911NF-15-1-0544,
-                W911NF-20-1-0255, and HR00112220036. Point of contact:
+                Its development is funded by DARPA grants HR00112220036. Point of contact:
                 <a href="mailto:b.gyori@northeastern.edu">Benjamin M. Gyori</a>.
             </p>
         </div>
@@ -166,7 +165,7 @@ <h4 class="modal-title">Context Text</h4>
 {% macro render_ner_form(form) %}
     <div class="panel panel-default">
         <div class="panel-heading">
-            <h3 class="panel-title">Gilda Annotation Input</h3>
+            <h3 class="panel-title">Gilda annotation input</h3>
         </div>
         <div class="panel-body">
             <form class="form" method="POST" role="form">

gilda/app/ui.py

@@ -64,16 +64,16 @@ class NERForm(FlaskForm):
         validators=[DataRequired()],
         description=dedent(
             """\
-            Enter text to annotate with named entity recognition (NER) and 
-            grounding. The results will highlight recognized entities and provide 
+            <p>Enter text to annotate with named entities and corresponding identifiers.
+            The results will highlight recognized entities and provide 
             text position, grounding information and normalized name for each 
-            entity. Click 
-            <button class="btn btn-default btn-xs" type="button" onclick="fillExample()">here</button> 
-            to get an example from an abstract in an 
+            entity.</p> <p>Click 
+            <a href="#" onclick="fillExample(); return false;">here</a>
+            for an example input text from an
             <a href="https://pubmed.ncbi.nlm.nih.gov/21040840/">article</a> 
             about small G-proteins."""
         ),
-        render_kw={"rows": 12},
+        render_kw={"rows": 6},
     )
     organisms = ORGANISMS_FIELD
     submit = SubmitField("Submit")