diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index e6c29e1e3..b2422566d 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -23,35 +23,19 @@ jobs: steps: - uses: actions/checkout@v3 - - name: Cache - uses: actions/cache@v3 + - uses: prefix-dev/setup-pixi@v0.4.1 with: - path: | - ~/.cache/ccache - ~/micromamba/envs/samurai-env - key: cppcheck + pixi-version: v0.10.0 + cache: false - - name: Mamba and samurai env installation - uses: mamba-org/setup-micromamba@v1 - with: - environment-file: conda/environment.yml - environment-name: samurai-env - cache-environment: true - - - name: cppcheck installation - shell: bash -el {0} - run: | - conda install -y cppcheck cxx-compiler + - name: Remove petsc + run: pixi remove -p linux-64 petsc - name: Configure - shell: bash -el {0} - run: | - cmake . -Bbuild -DCMAKE_EXPORT_COMPILE_COMMANDS=ON -DCMAKE_BUILD_TYPE=Debug -DBUILD_DEMOS=ON - - - name: Run cppcheck on samurai - shell: bash -el {0} + shell: pixi run bash {0} run: | - cppcheck --enable=all -q --project=./build/compile_commands.json --suppressions-list=.cppcheck --inline-suppr 2> cppcheck_err.txt + cmake -S . -B .build -DCMAKE_EXPORT_COMPILE_COMMANDS=ON -DCMAKE_BUILD_TYPE=Debug -DBUILD_DEMOS=ON + cppcheck --enable=all -q --project=.build/compile_commands.json --inline-suppr --suppressions-list=.cppcheck 2> cppcheck_err.txt - name: Check for errors run: | @@ -116,74 +100,30 @@ jobs: package: "clang-15" cc: "clang-15" cxx: "clang++-15" + + env: + CC: ${{ matrix.cc }} + CXX: ${{ matrix.cxx }} + steps: - uses: actions/checkout@v3 - - name: Cache - uses: actions/cache@v3 - with: - path: | - ~/.cache/ccache - ~/micromamba-root/envs/samurai-env - key: linux-${{ matrix.cpp-version }} - restore-keys: | - linux-${{ matrix.cpp-version }} - - - name: Compiler and dev tools installation + - name: Compiler installation run: | sudo apt update sudo apt install ${{ matrix.package }} - # - name: Information about ccache - # run: | - # ccache -s -v - - - name: Mamba and samurai env installation - uses: mamba-org/setup-micromamba@v1 + - uses: prefix-dev/setup-pixi@v0.4.1 with: - environment-file: conda/environment.yml - environment-name: samurai-env - cache-environment: true - - - name: Petsc installation - shell: bash -l {0} - run: | - conda install -y petsc=3.18 pkg-config - - - name: Conda informations - shell: bash -l {0} - run: | - conda info - conda list + pixi-version: v0.10.0 + cache: true - - name: Configure - shell: bash -l {0} - run: | - export LDFLAGS="${LDFLAGS} -L$CONDA_PREFIX/lib" - CC=${{ matrix.cc }} CXX=${{ matrix.cxx }} cmake \ - . \ - -Bbuild \ - -GNinja \ - -DCMAKE_BUILD_TYPE=Release \ - -DBUILD_DEMOS=ON \ - -DBUILD_TESTS=ON - - - name: Build - shell: bash -l {0} - run: | - cmake --build build --target all - - - name: Test with googletest - shell: bash -l {0} - run: | - export LD_LIBRARY_PATH="$CONDA_PREFIX/lib:$LD_LIBRARY_PATH" - cd build - ./tests/test_samurai_lib + - name: Run tests + run: pixi run test - name: Test with pytest - shell: bash -l {0} + shell: pixi run bash {0} run: | - export LD_LIBRARY_PATH="$CONDA_PREFIX/lib:$LD_LIBRARY_PATH" cd tests pytest -v -s --h5diff @@ -192,42 +132,17 @@ jobs: runs-on: macos-12 steps: - uses: actions/checkout@v3 - - name: Mamba and samurai env installation - uses: mamba-org/setup-micromamba@v1 - with: - environment-file: conda/environment.yml - environment-name: samurai-env - cache-environment: true - # - name: Petsc installation - # shell: bash -l {0} - # run: | - # micromamba install -y petsc=3.18 pkg-config - - - name: micromamba informations - shell: bash -l {0} - run: | - micromamba info - micromamba list - - - name: Configure - shell: bash -l {0} - run: | - cmake \ - . \ - -Bbuild \ - -GNinja \ - -DCMAKE_BUILD_TYPE=Release \ - -DBUILD_DEMOS=ON \ - -DBUILD_TESTS=ON - - - name: Build - shell: bash -l {0} - run: | - cmake --build ./build --config Release + - uses: prefix-dev/setup-pixi@v0.4.1 + with: + pixi-version: v0.10.0 + cache: true - name: Run tests - shell: bash -l {0} + run: pixi run test + + - name: Test with pytest + shell: pixi run bash {0} run: | - ./build/tests/test_samurai_lib - cd tests; pytest --h5diff + cd tests + pytest -v -s --h5diff diff --git a/CMakeLists.txt b/CMakeLists.txt index a49ce5b39..ad040f1d7 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt @@ -85,10 +85,13 @@ set_target_properties(samurai CXX_EXTENSIONS NO ) +set(CMAKE_MODULE_PATH "${PROJECT_SOURCE_DIR}/cmake" ${CMAKE_MODULE_PATH}) +include(addHighFive) + # Includes set(INCLUDE_DIR "include") # must be relative paths target_include_directories(samurai INTERFACE "$" - "$") +"$") # Find dependencies: set(DEPENDENCIES_CONFIGURED xtensor HighFive pugixml fmt) @@ -112,12 +115,11 @@ target_link_system_libraries( HighFive pugixml::pugixml fmt::fmt -) + ) -target_compile_features(samurai INTERFACE cxx_std_17) + target_compile_features(samurai INTERFACE cxx_std_17) -# target_compile_definitions(samurai INTERFACE _HAS_AUTO_PTR_ETC=0) -set(CMAKE_MODULE_PATH "${PROJECT_SOURCE_DIR}/cmake" ${CMAKE_MODULE_PATH}) + # target_compile_definitions(samurai INTERFACE _HAS_AUTO_PTR_ETC=0) OPTION(BUILD_BENCHMARKS "samurai benchmark suite" OFF) OPTION(BUILD_DEMOS "samurai build all demos" OFF) diff --git a/cmake/addHighFive.cmake b/cmake/addHighFive.cmake new file mode 100644 index 000000000..bfaae12ec --- /dev/null +++ b/cmake/addHighFive.cmake @@ -0,0 +1,11 @@ +include(FetchContent) +FetchContent_Declare(HighFive + GIT_REPOSITORY https://github.com/BlueBrain/HighFive + GIT_TAG v2.8.0) +FetchContent_GetProperties(highfive) +if(NOT HighFive_POPULATED) + FetchContent_Populate(HighFive) + set(CMAKE_SUPPRESS_DEVELOPER_WARNINGS 1 CACHE BOOL "") + add_subdirectory(${HighFive_SOURCE_DIR} ${HighFive_BINARY_DIR} EXCLUDE_FROM_ALL) + unset(CMAKE_SUPPRESS_DEVELOPER_WARNINGS) +endif() diff --git a/include/samurai/field.hpp b/include/samurai/field.hpp index ea62606af..440819284 100644 --- a/include/samurai/field.hpp +++ b/include/samurai/field.hpp @@ -567,7 +567,7 @@ namespace samurai } template - inline auto Field::operator=(const Field& field) -> Field& + inline auto Field::operator=(const Field& field) -> Field& // cppcheck-suppress operatorEqRetRefThis { inner_mesh_t::operator=(field.mesh()); m_name = field.m_name; diff --git a/include/samurai/numeric/gauss_legendre.hpp b/include/samurai/numeric/gauss_legendre.hpp index 427223b9d..5c23e440c 100644 --- a/include/samurai/numeric/gauss_legendre.hpp +++ b/include/samurai/numeric/gauss_legendre.hpp @@ -9,6 +9,7 @@ namespace samurai { private: + // cppcheck-suppress unusedPrivateFunction static constexpr std::size_t n_required_points(int degree) { return degree < 0 ? 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