From 54e1ea8cfa6745e4e36844e965e9a556b1a38e34 Mon Sep 17 00:00:00 2001
From: Tamara Slosarek <tamara.slosarek@hpi.de>
Date: Mon, 15 Jan 2024 17:32:43 +0100
Subject: [PATCH] feat(scripts): add script to get distinct CPIC lookup genes

---
 scripts/cpic_lookup_genes.py | 11 +++++++++++
 scripts/requirements.txt     |  3 ++-
 2 files changed, 13 insertions(+), 1 deletion(-)
 create mode 100644 scripts/cpic_lookup_genes.py

diff --git a/scripts/cpic_lookup_genes.py b/scripts/cpic_lookup_genes.py
new file mode 100644
index 000000000..2d0adbd8d
--- /dev/null
+++ b/scripts/cpic_lookup_genes.py
@@ -0,0 +1,11 @@
+import json
+import requests
+
+cpicLookupUrl = "https://api.cpicpgx.org/v1/diplotype?select=genesymbol"
+response = requests.get(cpicLookupUrl)
+cpicLookups = response.json()
+genes = set()
+for lookup in cpicLookups:
+    genes.add(lookup['genesymbol'])
+for gene in genes:
+    print(gene)
diff --git a/scripts/requirements.txt b/scripts/requirements.txt
index a8ea137b9..d98375c15 100644
--- a/scripts/requirements.txt
+++ b/scripts/requirements.txt
@@ -1,2 +1,3 @@
 pymongo==3.5.1
-pytest
\ No newline at end of file
+pytest
+requests
\ No newline at end of file