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some questions about genome version #64

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milkcookie opened this issue Apr 10, 2023 · 2 comments
Open

some questions about genome version #64

milkcookie opened this issue Apr 10, 2023 · 2 comments

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@milkcookie
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hi all:
is there any possible to change the config file to use hg19 genome for xHLA, can you tell me which files need to be changed?
@NourMarzouka
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Could you let me know if you found any solution for the hg19?
I have the same question because I have a large list of WES bams (hg19).

chr6
chr6_ssto_hap7
chr6_mcf_hap5
chr6_cox_hap2
chr6_mann_hap4
chr6_apd_hap1
chr6_qbl_hap6
chr6_dbb_hap3

With no HLA or ALT contigs

@serge2016
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Check this: master...isabl:xHLA:master

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@NourMarzouka @serge2016 @milkcookie