diff --git a/404.html b/404.html
index 38a89dc..0308b26 100644
--- a/404.html
+++ b/404.html
@@ -6,21 +6,21 @@
 <meta http-equiv="X-UA-Compatible" content="IE=edge">
 <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
 <title>Page not found (404) • hidradenitis</title>
-<script src="https://humanpred.github.io/hidradenitis/deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
-<link href="https://humanpred.github.io/hidradenitis/deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet">
-<script src="https://humanpred.github.io/hidradenitis/deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="https://humanpred.github.io/hidradenitis/deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet">
-<link href="https://humanpred.github.io/hidradenitis/deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet">
-<script src="https://humanpred.github.io/hidradenitis/deps/headroom-0.11.0/headroom.min.js"></script><script src="https://humanpred.github.io/hidradenitis/deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="https://humanpred.github.io/hidradenitis/deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="https://humanpred.github.io/hidradenitis/deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="https://humanpred.github.io/hidradenitis/deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="https://humanpred.github.io/hidradenitis/deps/search-1.0.0/fuse.min.js"></script><script src="https://humanpred.github.io/hidradenitis/deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="https://humanpred.github.io/hidradenitis/pkgdown.js"></script><meta property="og:title" content="Page not found (404)">
+<script src="https://billdenney.github.io/hidradenitis/deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
+<link href="https://billdenney.github.io/hidradenitis/deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet">
+<script src="https://billdenney.github.io/hidradenitis/deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="https://billdenney.github.io/hidradenitis/deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet">
+<link href="https://billdenney.github.io/hidradenitis/deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet">
+<script src="https://billdenney.github.io/hidradenitis/deps/headroom-0.11.0/headroom.min.js"></script><script src="https://billdenney.github.io/hidradenitis/deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="https://billdenney.github.io/hidradenitis/deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="https://billdenney.github.io/hidradenitis/deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="https://billdenney.github.io/hidradenitis/deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="https://billdenney.github.io/hidradenitis/deps/search-1.0.0/fuse.min.js"></script><script src="https://billdenney.github.io/hidradenitis/deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="https://billdenney.github.io/hidradenitis/pkgdown.js"></script><meta property="og:title" content="Page not found (404)">
 </head>
 <body>
-    <a href="https://humanpred.github.io/hidradenitis/#main" class="visually-hidden-focusable">Skip to contents</a>
+    <a href="https://billdenney.github.io/hidradenitis/#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-light" data-bs-theme="light" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="https://humanpred.github.io/hidradenitis/index.html">hidradenitis</a>
+    <a class="navbar-brand me-2" href="https://billdenney.github.io/hidradenitis/index.html">hidradenitis</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.0.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.0.0</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -29,14 +29,14 @@
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
       <ul class="navbar-nav me-auto">
-<li class="nav-item"><a class="nav-link" href="https://humanpred.github.io/hidradenitis/reference/index.html">Reference</a></li>
-<li class="nav-item"><a class="nav-link" href="https://humanpred.github.io/hidradenitis/news/index.html">Changelog</a></li>
+<li class="nav-item"><a class="nav-link" href="https://billdenney.github.io/hidradenitis/reference/index.html">Reference</a></li>
+<li class="nav-item"><a class="nav-link" href="https://billdenney.github.io/hidradenitis/news/index.html">Changelog</a></li>
       </ul>
 <ul class="navbar-nav">
 <li class="nav-item"><form class="form-inline" role="search">
  <input class="form-control" type="search" name="search-input" id="search-input" autocomplete="off" aria-label="Search site" placeholder="Search for" data-search-index="search.json">
 </form></li>
-<li class="nav-item"><a class="external-link nav-link" href="https://github.com/humanpred/hidradenitis/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
+<li class="nav-item"><a class="external-link nav-link" href="https://github.com/billdenney/hidradenitis/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
       </ul>
 </div>
 
diff --git a/LICENSE.html b/LICENSE.html
index d6f2333..0affae1 100644
--- a/LICENSE.html
+++ b/LICENSE.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="index.html">hidradenitis</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.0.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.0.0</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -19,7 +19,7 @@
 <li class="nav-item"><a class="nav-link" href="news/index.html">Changelog</a></li>
       </ul><ul class="navbar-nav"><li class="nav-item"><form class="form-inline" role="search">
  <input class="form-control" type="search" name="search-input" id="search-input" autocomplete="off" aria-label="Search site" placeholder="Search for" data-search-index="search.json"></form></li>
-<li class="nav-item"><a class="external-link nav-link" href="https://github.com/humanpred/hidradenitis/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
+<li class="nav-item"><a class="external-link nav-link" href="https://github.com/billdenney/hidradenitis/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
       </ul></div>
 
 
@@ -29,7 +29,7 @@
   <main id="main" class="col-md-9"><div class="page-header">
 
       <h1>GNU General Public License</h1>
-      <small class="dont-index">Source: <a href="https://github.com/humanpred/hidradenitis/blob/main/LICENSE.md" class="external-link"><code>LICENSE.md</code></a></small>
+      <small class="dont-index">Source: <a href="https://github.com/billdenney/hidradenitis/blob/v1.0.0/LICENSE.md" class="external-link"><code>LICENSE.md</code></a></small>
     </div>
 
 <div id="gnu-general-public-license" class="section level1">
diff --git a/authors.html b/authors.html
index 1badd2a..6702db4 100644
--- a/authors.html
+++ b/authors.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="index.html">hidradenitis</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.0.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.0.0</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -19,7 +19,7 @@
 <li class="nav-item"><a class="nav-link" href="news/index.html">Changelog</a></li>
       </ul><ul class="navbar-nav"><li class="nav-item"><form class="form-inline" role="search">
  <input class="form-control" type="search" name="search-input" id="search-input" autocomplete="off" aria-label="Search site" placeholder="Search for" data-search-index="search.json"></form></li>
-<li class="nav-item"><a class="external-link nav-link" href="https://github.com/humanpred/hidradenitis/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
+<li class="nav-item"><a class="external-link nav-link" href="https://github.com/billdenney/hidradenitis/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
       </ul></div>
 
 
@@ -46,18 +46,18 @@ <h2>Authors</h2>
 
     <div class="section level2">
       <h2 id="citation">Citation</h2>
-      <p><small class="dont-index">Source: <a href="https://github.com/humanpred/hidradenitis/blob/main/DESCRIPTION" class="external-link"><code>DESCRIPTION</code></a></small></p>
+      <p><small class="dont-index">Source: <a href="https://github.com/billdenney/hidradenitis/blob/v1.0.0/DESCRIPTION" class="external-link"><code>DESCRIPTION</code></a></small></p>
 
       <p>Denney B, Bartlett D (2024).
 <em>hidradenitis: Calculate Clinical Scores for Hidradenitis Suppurativa (HS), a Dermatologic Disease</em>.
-R package version 1.0.1, <a href="https://humanpred.github.io/hidradenitis/">https://humanpred.github.io/hidradenitis/</a>.
+R package version 1.0.0, <a href="https://billdenney.github.io/hidradenitis/">https://billdenney.github.io/hidradenitis/</a>.
 </p>
       <pre>@Manual{,
   title = {hidradenitis: Calculate Clinical Scores for Hidradenitis Suppurativa (HS), a Dermatologic Disease},
   author = {Bill Denney and Devon Bartlett},
   year = {2024},
-  note = {R package version 1.0.1},
-  url = {https://humanpred.github.io/hidradenitis/},
+  note = {R package version 1.0.0},
+  url = {https://billdenney.github.io/hidradenitis/},
 }</pre>
     </div>
 
diff --git a/index.html b/index.html
index dc8ef5d..c46cbba 100644
--- a/index.html
+++ b/index.html
@@ -22,7 +22,7 @@
 
     <a class="navbar-brand me-2" href="index.html">hidradenitis</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.0.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.0.0</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -38,7 +38,7 @@
 <li class="nav-item"><form class="form-inline" role="search">
  <input class="form-control" type="search" name="search-input" id="search-input" autocomplete="off" aria-label="Search site" placeholder="Search for" data-search-index="search.json">
 </form></li>
-<li class="nav-item"><a class="external-link nav-link" href="https://github.com/humanpred/hidradenitis/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
+<li class="nav-item"><a class="external-link nav-link" href="https://github.com/billdenney/hidradenitis/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
       </ul>
 </div>
 
@@ -68,7 +68,7 @@ <h3 id="development-version">Development version<a class="anchor" aria-label="an
 <p>You can install the development version of hidradenitis from <a href="https://github.com/" class="external-link">GitHub</a> with:</p>
 <div class="sourceCode" id="cb2"><pre class="downlit sourceCode r">
 <code class="sourceCode R"><span><span class="co"># install.packages("devtools")</span></span>
-<span><span class="fu">devtools</span><span class="fu">::</span><span class="fu">install_github</span><span class="op">(</span><span class="st">"humanpred/hidradenitis"</span><span class="op">)</span></span></code></pre></div>
+<span><span class="fu">devtools</span><span class="fu">::</span><span class="fu">install_github</span><span class="op">(</span><span class="st">"billdenney/hidradenitis"</span><span class="op">)</span></span></code></pre></div>
 </div>
 </div>
 <div class="section level2">
@@ -76,7 +76,7 @@ <h2 id="example">Example<a class="anchor" aria-label="anchor" href="#example"></
 </h2>
 <p>This is a basic example which shows you how to solve a common problem:</p>
 <div class="sourceCode" id="cb3"><pre class="downlit sourceCode r">
-<code class="sourceCode R"><span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">library</a></span><span class="op">(</span><span class="va"><a href="https://humanpred.github.io/hidradenitis/">hidradenitis</a></span><span class="op">)</span></span>
+<code class="sourceCode R"><span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">library</a></span><span class="op">(</span><span class="va"><a href="https://billdenney.github.io/hidradenitis/">hidradenitis</a></span><span class="op">)</span></span>
 <span></span>
 <span><span class="fu"><a href="reference/hasi_r_num.html">hasi_r_num</a></span><span class="op">(</span></span>
 <span>  bsa_percent_within_site <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fl">0</span>, <span class="fl">0</span>, <span class="fl">0</span>, <span class="fl">0</span>, <span class="fl">5</span>, <span class="fl">1</span>, <span class="fl">4.3</span>, <span class="fl">1.2</span>, <span class="fl">6.8</span>, <span class="fl">7.2</span><span class="op">)</span>,</span>
@@ -121,8 +121,8 @@ <h2 id="example">Example<a class="anchor" aria-label="anchor" href="#example"></
 <h2 data-toc-skip>Links</h2>
 <ul class="list-unstyled">
 <li><a href="https://cloud.r-project.org/package=hidradenitis" class="external-link">View on CRAN</a></li>
-<li><a href="https://github.com/humanpred/hidradenitis/" class="external-link">Browse source code</a></li>
-<li><a href="https://github.com/humanpred/hidradenitis/issues" class="external-link">Report a bug</a></li>
+<li><a href="https://github.com/billdenney/hidradenitis/" class="external-link">Browse source code</a></li>
+<li><a href="https://github.com/billdenney/hidradenitis/issues" class="external-link">Report a bug</a></li>
 </ul>
 </div>
 
@@ -153,10 +153,10 @@ <h2 data-toc-skip>Developers</h2>
 <div class="dev-status">
 <h2 data-toc-skip>Dev status</h2>
 <ul class="list-unstyled">
-<li><a href="https://github.com/humanpred/hidradenitis/actions/workflows/R-CMD-check.yaml" class="external-link"><img src="https://github.com/humanpred/hidradenitis/actions/workflows/R-CMD-check.yaml/badge.svg" alt="R-CMD-check"></a></li>
-<li><a href="https://app.codecov.io/gh/humanpred/hidradenitis" class="external-link"><img src="https://codecov.io/gh/humanpred/hidradenitis/graph/badge.svg" alt="Codecov test coverage"></a></li>
+<li><a href="https://github.com/billdenney/hidradenitis/actions/workflows/R-CMD-check.yaml" class="external-link"><img src="https://github.com/billdenney/hidradenitis/actions/workflows/R-CMD-check.yaml/badge.svg" alt="R-CMD-check"></a></li>
+<li><a href="https://app.codecov.io/gh/billdenney/hidradenitis?branch=main" class="external-link"><img src="https://codecov.io/gh/billdenney/hidradenitis/branch/main/graph/badge.svg" alt="Codecov test coverage"></a></li>
 <li><a href="https://CRAN.R-project.org/package=hidradenitis" class="external-link"><img src="https://www.r-pkg.org/badges/version/hidradenitis" alt="CRAN status"></a></li>
-<li><a href="https://www.codefactor.io/repository/github/humanpred/hidradenitis" class="external-link"><img src="https://www.codefactor.io/repository/github/humanpred/hidradenitis/badge" alt="CodeFactor"></a></li>
+<li><a href="https://www.codefactor.io/repository/github/billdenney/hidradenitis" class="external-link"><img src="https://www.codefactor.io/repository/github/billdenney/hidradenitis/badge" alt="CodeFactor"></a></li>
 </ul>
 </div>
 
diff --git a/news/index.html b/news/index.html
index 625d04f..293ac62 100644
--- a/news/index.html
+++ b/news/index.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">hidradenitis</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.0.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.0.0</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -19,7 +19,7 @@
 <li class="active nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
       </ul><ul class="navbar-nav"><li class="nav-item"><form class="form-inline" role="search">
  <input class="form-control" type="search" name="search-input" id="search-input" autocomplete="off" aria-label="Search site" placeholder="Search for" data-search-index="../search.json"></form></li>
-<li class="nav-item"><a class="external-link nav-link" href="https://github.com/humanpred/hidradenitis/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
+<li class="nav-item"><a class="external-link nav-link" href="https://github.com/billdenney/hidradenitis/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
       </ul></div>
 
 
@@ -29,7 +29,7 @@
   <main id="main" class="col-md-9"><div class="page-header">
 
       <h1>Changelog</h1>
-      <small>Source: <a href="https://github.com/humanpred/hidradenitis/blob/main/NEWS.md" class="external-link"><code>NEWS.md</code></a></small>
+      <small>Source: <a href="https://github.com/billdenney/hidradenitis/blob/v1.0.0/NEWS.md" class="external-link"><code>NEWS.md</code></a></small>
     </div>
 
     <div class="section level2">
diff --git a/pkgdown.yml b/pkgdown.yml
index ce58d0b..a0a98de 100644
--- a/pkgdown.yml
+++ b/pkgdown.yml
@@ -2,7 +2,7 @@ pandoc: 3.1.11
 pkgdown: 2.1.1
 pkgdown_sha: ~
 articles: {}
-last_built: 2024-12-29T17:51Z
+last_built: 2024-12-30T16:08Z
 urls:
-  reference: https://humanpred.github.io/hidradenitis/reference
-  article: https://humanpred.github.io/hidradenitis/articles
+  reference: https://billdenney.github.io/hidradenitis/reference
+  article: https://billdenney.github.io/hidradenitis/articles
diff --git a/reference/hasi_bsa_to_ordinal.html b/reference/hasi_bsa_to_ordinal.html
index ebce548..17f950e 100644
--- a/reference/hasi_bsa_to_ordinal.html
+++ b/reference/hasi_bsa_to_ordinal.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">hidradenitis</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.0.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.0.0</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -19,7 +19,7 @@
 <li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
       </ul><ul class="navbar-nav"><li class="nav-item"><form class="form-inline" role="search">
  <input class="form-control" type="search" name="search-input" id="search-input" autocomplete="off" aria-label="Search site" placeholder="Search for" data-search-index="../search.json"></form></li>
-<li class="nav-item"><a class="external-link nav-link" href="https://github.com/humanpred/hidradenitis/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
+<li class="nav-item"><a class="external-link nav-link" href="https://github.com/billdenney/hidradenitis/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
       </ul></div>
 
 
@@ -29,7 +29,7 @@
   <main id="main" class="col-md-9"><div class="page-header">
 
       <h1>Converts BSA percentage to the ordinal scale for HASI-R scoring.</h1>
-      <small class="dont-index">Source: <a href="https://github.com/humanpred/hidradenitis/blob/main/R/hasi_bsa_to_ordinal.R" class="external-link"><code>R/hasi_bsa_to_ordinal.R</code></a></small>
+      <small class="dont-index">Source: <a href="https://github.com/billdenney/hidradenitis/blob/v1.0.0/R/hasi_bsa_to_ordinal.R" class="external-link"><code>R/hasi_bsa_to_ordinal.R</code></a></small>
       <div class="d-none name"><code>hasi_bsa_to_ordinal.Rd</code></div>
     </div>
 
diff --git a/reference/hasi_r_num.html b/reference/hasi_r_num.html
index cb1edc0..6791ef7 100644
--- a/reference/hasi_r_num.html
+++ b/reference/hasi_r_num.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">hidradenitis</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.0.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.0.0</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -19,7 +19,7 @@
 <li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
       </ul><ul class="navbar-nav"><li class="nav-item"><form class="form-inline" role="search">
  <input class="form-control" type="search" name="search-input" id="search-input" autocomplete="off" aria-label="Search site" placeholder="Search for" data-search-index="../search.json"></form></li>
-<li class="nav-item"><a class="external-link nav-link" href="https://github.com/humanpred/hidradenitis/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
+<li class="nav-item"><a class="external-link nav-link" href="https://github.com/billdenney/hidradenitis/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
       </ul></div>
 
 
@@ -29,7 +29,7 @@
   <main id="main" class="col-md-9"><div class="page-header">
 
       <h1>Calculates the HASI-R score for each patient and visit.</h1>
-      <small class="dont-index">Source: <a href="https://github.com/humanpred/hidradenitis/blob/main/R/hasi_r_num.R" class="external-link"><code>R/hasi_r_num.R</code></a></small>
+      <small class="dont-index">Source: <a href="https://github.com/billdenney/hidradenitis/blob/v1.0.0/R/hasi_r_num.R" class="external-link"><code>R/hasi_r_num.R</code></a></small>
       <div class="d-none name"><code>hasi_r_num.Rd</code></div>
     </div>
 
diff --git a/reference/hiscr.html b/reference/hiscr.html
index e7794d6..7f6bcae 100644
--- a/reference/hiscr.html
+++ b/reference/hiscr.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">hidradenitis</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.0.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.0.0</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -19,7 +19,7 @@
 <li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
       </ul><ul class="navbar-nav"><li class="nav-item"><form class="form-inline" role="search">
  <input class="form-control" type="search" name="search-input" id="search-input" autocomplete="off" aria-label="Search site" placeholder="Search for" data-search-index="../search.json"></form></li>
-<li class="nav-item"><a class="external-link nav-link" href="https://github.com/humanpred/hidradenitis/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
+<li class="nav-item"><a class="external-link nav-link" href="https://github.com/billdenney/hidradenitis/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
       </ul></div>
 
 
@@ -29,7 +29,7 @@
   <main id="main" class="col-md-9"><div class="page-header">
 
       <h1>Calculates HiSCR scores given a percentage parameter.</h1>
-      <small class="dont-index">Source: <a href="https://github.com/humanpred/hidradenitis/blob/main/R/hiscr.R" class="external-link"><code>R/hiscr.R</code></a></small>
+      <small class="dont-index">Source: <a href="https://github.com/billdenney/hidradenitis/blob/v1.0.0/R/hiscr.R" class="external-link"><code>R/hiscr.R</code></a></small>
       <div class="d-none name"><code>hiscr.Rd</code></div>
     </div>
 
diff --git a/reference/hs_pga_char.html b/reference/hs_pga_char.html
index ba53c4d..8689fe6 100644
--- a/reference/hs_pga_char.html
+++ b/reference/hs_pga_char.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">hidradenitis</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.0.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.0.0</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -19,7 +19,7 @@
 <li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
       </ul><ul class="navbar-nav"><li class="nav-item"><form class="form-inline" role="search">
  <input class="form-control" type="search" name="search-input" id="search-input" autocomplete="off" aria-label="Search site" placeholder="Search for" data-search-index="../search.json"></form></li>
-<li class="nav-item"><a class="external-link nav-link" href="https://github.com/humanpred/hidradenitis/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
+<li class="nav-item"><a class="external-link nav-link" href="https://github.com/billdenney/hidradenitis/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
       </ul></div>
 
 
@@ -29,7 +29,7 @@
   <main id="main" class="col-md-9"><div class="page-header">
 
       <h1>Converts HS-PGA numerical scores to character values.</h1>
-      <small class="dont-index">Source: <a href="https://github.com/humanpred/hidradenitis/blob/main/R/hs_pga_char.R" class="external-link"><code>R/hs_pga_char.R</code></a></small>
+      <small class="dont-index">Source: <a href="https://github.com/billdenney/hidradenitis/blob/v1.0.0/R/hs_pga_char.R" class="external-link"><code>R/hs_pga_char.R</code></a></small>
       <div class="d-none name"><code>hs_pga_char.Rd</code></div>
     </div>
 
diff --git a/reference/hs_pga_num.html b/reference/hs_pga_num.html
index 4383f14..419eb13 100644
--- a/reference/hs_pga_num.html
+++ b/reference/hs_pga_num.html
@@ -9,7 +9,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">hidradenitis</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.0.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.0.0</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -21,7 +21,7 @@
 <li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
       </ul><ul class="navbar-nav"><li class="nav-item"><form class="form-inline" role="search">
  <input class="form-control" type="search" name="search-input" id="search-input" autocomplete="off" aria-label="Search site" placeholder="Search for" data-search-index="../search.json"></form></li>
-<li class="nav-item"><a class="external-link nav-link" href="https://github.com/humanpred/hidradenitis/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
+<li class="nav-item"><a class="external-link nav-link" href="https://github.com/billdenney/hidradenitis/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
       </ul></div>
 
 
@@ -31,7 +31,7 @@
   <main id="main" class="col-md-9"><div class="page-header">
 
       <h1>Calculates HS-PGA scores based on abscess, draining fistula, and inflammatory nodule counts.</h1>
-      <small class="dont-index">Source: <a href="https://github.com/humanpred/hidradenitis/blob/main/R/hs_pga_num.R" class="external-link"><code>R/hs_pga_num.R</code></a></small>
+      <small class="dont-index">Source: <a href="https://github.com/billdenney/hidradenitis/blob/v1.0.0/R/hs_pga_num.R" class="external-link"><code>R/hs_pga_num.R</code></a></small>
       <div class="d-none name"><code>hs_pga_num.Rd</code></div>
     </div>
 
diff --git a/reference/ihs4_char.html b/reference/ihs4_char.html
index b4eb034..daadede 100644
--- a/reference/ihs4_char.html
+++ b/reference/ihs4_char.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">hidradenitis</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.0.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.0.0</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -19,7 +19,7 @@
 <li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
       </ul><ul class="navbar-nav"><li class="nav-item"><form class="form-inline" role="search">
  <input class="form-control" type="search" name="search-input" id="search-input" autocomplete="off" aria-label="Search site" placeholder="Search for" data-search-index="../search.json"></form></li>
-<li class="nav-item"><a class="external-link nav-link" href="https://github.com/humanpred/hidradenitis/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
+<li class="nav-item"><a class="external-link nav-link" href="https://github.com/billdenney/hidradenitis/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
       </ul></div>
 
 
@@ -29,7 +29,7 @@
   <main id="main" class="col-md-9"><div class="page-header">
 
       <h1>Converts IHS4 numerical scores to character values.</h1>
-      <small class="dont-index">Source: <a href="https://github.com/humanpred/hidradenitis/blob/main/R/ihs4_char.R" class="external-link"><code>R/ihs4_char.R</code></a></small>
+      <small class="dont-index">Source: <a href="https://github.com/billdenney/hidradenitis/blob/v1.0.0/R/ihs4_char.R" class="external-link"><code>R/ihs4_char.R</code></a></small>
       <div class="d-none name"><code>ihs4_char.Rd</code></div>
     </div>
 
diff --git a/reference/ihs4_num.html b/reference/ihs4_num.html
index 1472987..afaa208 100644
--- a/reference/ihs4_num.html
+++ b/reference/ihs4_num.html
@@ -9,7 +9,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">hidradenitis</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.0.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.0.0</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -21,7 +21,7 @@
 <li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
       </ul><ul class="navbar-nav"><li class="nav-item"><form class="form-inline" role="search">
  <input class="form-control" type="search" name="search-input" id="search-input" autocomplete="off" aria-label="Search site" placeholder="Search for" data-search-index="../search.json"></form></li>
-<li class="nav-item"><a class="external-link nav-link" href="https://github.com/humanpred/hidradenitis/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
+<li class="nav-item"><a class="external-link nav-link" href="https://github.com/billdenney/hidradenitis/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
       </ul></div>
 
 
@@ -31,7 +31,7 @@
   <main id="main" class="col-md-9"><div class="page-header">
 
       <h1>Calculates IHS4 scores based on abscess, draining fistula, and inflammatory nodule counts.</h1>
-      <small class="dont-index">Source: <a href="https://github.com/humanpred/hidradenitis/blob/main/R/ihs4_num.R" class="external-link"><code>R/ihs4_num.R</code></a></small>
+      <small class="dont-index">Source: <a href="https://github.com/billdenney/hidradenitis/blob/v1.0.0/R/ihs4_num.R" class="external-link"><code>R/ihs4_num.R</code></a></small>
       <div class="d-none name"><code>ihs4_num.Rd</code></div>
     </div>
 
diff --git a/reference/index.html b/reference/index.html
index 0353998..8918b82 100644
--- a/reference/index.html
+++ b/reference/index.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">hidradenitis</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.0.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.0.0</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -19,7 +19,7 @@
 <li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
       </ul><ul class="navbar-nav"><li class="nav-item"><form class="form-inline" role="search">
  <input class="form-control" type="search" name="search-input" id="search-input" autocomplete="off" aria-label="Search site" placeholder="Search for" data-search-index="../search.json"></form></li>
-<li class="nav-item"><a class="external-link nav-link" href="https://github.com/humanpred/hidradenitis/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
+<li class="nav-item"><a class="external-link nav-link" href="https://github.com/billdenney/hidradenitis/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
       </ul></div>
 
 
diff --git a/search.json b/search.json
index a152b97..2a586fb 100644
--- a/search.json
+++ b/search.json
@@ -1 +1 @@
-[{"path":"https://humanpred.github.io/hidradenitis/LICENSE.html","id":null,"dir":"","previous_headings":"","what":"GNU General Public License","title":"GNU General Public License","text":"Version 3, 29 June 2007Copyright © 2007 Free Software Foundation, Inc. <http://fsf.org/> Everyone permitted copy distribute verbatim copies license document, changing allowed.","code":""},{"path":"https://humanpred.github.io/hidradenitis/LICENSE.html","id":"preamble","dir":"","previous_headings":"","what":"Preamble","title":"GNU General Public License","text":"GNU General Public License free, copyleft license software kinds works. licenses software practical works designed take away freedom share change works. contrast, GNU General Public License intended guarantee freedom share change versions program–make sure remains free software users. , Free Software Foundation, use GNU General Public License software; applies also work released way authors. can apply programs, . speak free software, referring freedom, price. General Public Licenses designed make sure freedom distribute copies free software (charge wish), receive source code can get want , can change software use pieces new free programs, know can things. protect rights, need prevent others denying rights asking surrender rights. Therefore, certain responsibilities distribute copies software, modify : responsibilities respect freedom others. example, distribute copies program, whether gratis fee, must pass recipients freedoms received. must make sure , , receive can get source code. must show terms know rights. 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Mere interaction user computer network, transfer copy, conveying. interactive user interface displays “Appropriate Legal Notices” extent includes convenient prominently visible feature (1) displays appropriate copyright notice, (2) tells user warranty work (except extent warranties provided), licensees may convey work License, view copy License. interface presents list user commands options, menu, prominent item list meets criterion.","code":""},{"path":"https://humanpred.github.io/hidradenitis/LICENSE.html","id":"id_1-source-code","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"1. 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License gives permission license work way, invalidate permission separately received . d) work interactive user interfaces, must display Appropriate Legal Notices; however, Program interactive interfaces display Appropriate Legal Notices, work need make . compilation covered work separate independent works, nature extensions covered work, combined form larger program, volume storage distribution medium, called “aggregate” compilation resulting copyright used limit access legal rights compilation’s users beyond individual works permit. Inclusion covered work aggregate cause License apply parts aggregate.","code":""},{"path":"https://humanpred.github.io/hidradenitis/LICENSE.html","id":"id_6-conveying-non-source-forms","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"6. 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Regardless server hosts Corresponding Source, remain obligated ensure available long needed satisfy requirements. e) Convey object code using peer--peer transmission, provided inform peers object code Corresponding Source work offered general public charge subsection 6d. separable portion object code, whose source code excluded Corresponding Source System Library, need included conveying object code work. “User Product” either (1) “consumer product”, means tangible personal property normally used personal, family, household purposes, (2) anything designed sold incorporation dwelling. determining whether product consumer product, doubtful cases shall resolved favor coverage. particular product received particular user, “normally used” refers typical common use class product, regardless status particular user way particular user actually uses, expects expected use, product. product consumer product regardless whether product substantial commercial, industrial non-consumer uses, unless uses represent significant mode use product. “Installation Information” User Product means methods, procedures, authorization keys, information required install execute modified versions covered work User Product modified version Corresponding Source. information must suffice ensure continued functioning modified object code case prevented interfered solely modification made. convey object code work section , , specifically use , User Product, conveying occurs part transaction right possession use User Product transferred recipient perpetuity fixed term (regardless transaction characterized), Corresponding Source conveyed section must accompanied Installation Information. requirement apply neither third party retains ability install modified object code User Product (example, work installed ROM). requirement provide Installation Information include requirement continue provide support service, warranty, updates work modified installed recipient, User Product modified installed. 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Additional permissions applicable entire Program shall treated though included License, extent valid applicable law. additional permissions apply part Program, part may used separately permissions, entire Program remains governed License without regard additional permissions. convey copy covered work, may option remove additional permissions copy, part . (Additional permissions may written require removal certain cases modify work.) may place additional permissions material, added covered work, can give appropriate copyright permission. Notwithstanding provision License, material add covered work, may (authorized copyright holders material) supplement terms License terms: ) Disclaiming warranty limiting liability differently terms sections 15 16 License; b) Requiring preservation specified reasonable legal notices author attributions material Appropriate Legal Notices displayed works containing ; c) Prohibiting misrepresentation origin material, requiring modified versions material marked reasonable ways different original version; d) Limiting use publicity purposes names licensors authors material; e) Declining grant rights trademark law use trade names, trademarks, service marks; f) Requiring indemnification licensors authors material anyone conveys material (modified versions ) contractual assumptions liability recipient, liability contractual assumptions directly impose licensors authors. non-permissive additional terms considered “restrictions” within meaning section 10. Program received , part , contains notice stating governed License along term restriction, may remove term. license document contains restriction permits relicensing conveying License, may add covered work material governed terms license document, provided restriction survive relicensing conveying. add terms covered work accord section, must place, relevant source files, statement additional terms apply files, notice indicating find applicable terms. Additional terms, permissive non-permissive, may stated form separately written license, stated exceptions; requirements apply either way.","code":""},{"path":"https://humanpred.github.io/hidradenitis/LICENSE.html","id":"id_8-termination","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"8. Termination","title":"GNU General Public License","text":"may propagate modify covered work except expressly provided License. attempt otherwise propagate modify void, automatically terminate rights License (including patent licenses granted third paragraph section 11). However, cease violation License, license particular copyright holder reinstated () provisionally, unless copyright holder explicitly finally terminates license, (b) permanently, copyright holder fails notify violation reasonable means prior 60 days cessation. Moreover, license particular copyright holder reinstated permanently copyright holder notifies violation reasonable means, first time received notice violation License (work) copyright holder, cure violation prior 30 days receipt notice. 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If not, see <http://www.gnu.org/licenses/>. <program>  Copyright (C) <year>  <name of author> This program comes with ABSOLUTELY NO WARRANTY; for details type 'show w'. This is free software, and you are welcome to redistribute it under certain conditions; type 'show c' for details."},{"path":"https://humanpred.github.io/hidradenitis/authors.html","id":null,"dir":"","previous_headings":"","what":"Authors","title":"Authors and Citation","text":"Bill Denney. Author, maintainer. Devon Bartlett. Author.","code":""},{"path":"https://humanpred.github.io/hidradenitis/authors.html","id":"citation","dir":"","previous_headings":"","what":"Citation","title":"Authors and Citation","text":"Denney B, Bartlett D (2024). hidradenitis: Calculate Clinical Scores Hidradenitis Suppurativa (HS), Dermatologic Disease. R package version 1.0.1, https://humanpred.github.io/hidradenitis/.","code":"@Manual{,   title = {hidradenitis: Calculate Clinical Scores for Hidradenitis Suppurativa (HS), a Dermatologic Disease},   author = {Bill Denney and Devon Bartlett},   year = {2024},   note = {R package version 1.0.1},   url = {https://humanpred.github.io/hidradenitis/}, }"},{"path":"https://humanpred.github.io/hidradenitis/index.html","id":"hidradenitis","dir":"","previous_headings":"","what":"Calculate Clinical Scores for Hidradenitis Suppurativa (HS), a Dermatologic Disease","title":"Calculate Clinical Scores for Hidradenitis Suppurativa (HS), a Dermatologic Disease","text":"goal hidradenitis package support use interpretation clinical scores hidradenitis suppurativa.","code":""},{"path":[]},{"path":"https://humanpred.github.io/hidradenitis/index.html","id":"stable-version","dir":"","previous_headings":"Installation","what":"Stable version","title":"Calculate Clinical Scores for Hidradenitis Suppurativa (HS), a Dermatologic Disease","text":"can install stable version hidradenitis CRAN :","code":"install.packages(\"devtools\")"},{"path":"https://humanpred.github.io/hidradenitis/index.html","id":"development-version","dir":"","previous_headings":"Installation","what":"Development version","title":"Calculate Clinical Scores for Hidradenitis Suppurativa (HS), a Dermatologic Disease","text":"can install development version hidradenitis GitHub :","code":"# install.packages(\"devtools\") devtools::install_github(\"humanpred/hidradenitis\")"},{"path":"https://humanpred.github.io/hidradenitis/index.html","id":"example","dir":"","previous_headings":"","what":"Example","title":"Calculate Clinical Scores for Hidradenitis Suppurativa (HS), a Dermatologic Disease","text":"basic example shows solve common problem:","code":"library(hidradenitis)  hasi_r_num(   bsa_percent_within_site = c(0, 0, 0, 0, 5, 1, 4.3, 1.2, 6.8, 7.2),   bodysite =     c(\"Right Axilla\", \"Buttocks including Intergluteal Cleft\",       \"Back\", \"Left Thigh\", \"Head & Neck\", \"Left Axilla\",       \"Chest\", \"Pubis & Genitals\", \"Abdomen\", \"Right Thigh\"),   inflam_color_chg = c(0, 0, 0, 0, 2, 3, 1, 3, 2, 0),   induration = c(0, 0, 0, 0, 2, 3, 1, 3, 2, 0),   open_skin_surface = c(0, 0, 0, 0, 2, 3, 1, 3, 2, 0),   tunnels = c(0, 0, 0, 0, 2, 3, 1, 3, 2, 0) )  hiscr(   baseline_abscess = c(3, 2, 4),   baseline_nodule = c(5, 4, 6),   baseline_fistula = c(2, 1, 3),   timepoint_abscess = c(1, 1, 2),   timepoint_nodule = c(2, 3, 2),   timepoint_fistula = c(2, 1, 3),   percentage = 50 )  hs_pga <-   hs_pga_num(     abscess_fistula = c(0, 0, 1, 0, 1, 2, 6),     inflammatory_nodule = c(0, 0, 0, 3, 5, 8, 12),     non_inflammatory_nodule = c(0, 1, 0, 0, 0, 0, 0)   ) hs_pga_char(hs_pga)  ihs4 <-   ihs4_num(     nodules = c(5, 3, 2),     abscesses = c(2, 1, 0),     draining_tunnels = c(1, 2, 3)   ) ihs4_char(ihs4)"},{"path":"https://humanpred.github.io/hidradenitis/reference/hasi_bsa_to_ordinal.html","id":null,"dir":"Reference","previous_headings":"","what":"Converts BSA percentage to the ordinal scale for HASI-R scoring. — hasi_bsa_to_ordinal","title":"Converts BSA percentage to the ordinal scale for HASI-R scoring. — hasi_bsa_to_ordinal","text":"Converts BSA percentage ordinal scale HASI-R scoring.","code":""},{"path":"https://humanpred.github.io/hidradenitis/reference/hasi_bsa_to_ordinal.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Converts BSA percentage to the ordinal scale for HASI-R scoring. — hasi_bsa_to_ordinal","text":"","code":"hasi_bsa_to_ordinal(   bsa_percent_within_site = NULL,   bsa_percent_total_body = NULL,   bsa_ordinal = NULL,   bodysite = NULL )"},{"path":"https://humanpred.github.io/hidradenitis/reference/hasi_bsa_to_ordinal.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Converts BSA percentage to the ordinal scale for HASI-R scoring. — hasi_bsa_to_ordinal","text":"bsa_percent_within_site Numeric vector representing BSA percentages (0-100) bsa_percent_total_body Numeric vector representing BSA percentages (0-15, depending site) bsa_ordinal Numeric vector representing BSA values. (0-6) bodysite Optional character vector representing body sites","code":""},{"path":"https://humanpred.github.io/hidradenitis/reference/hasi_bsa_to_ordinal.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Converts BSA percentage to the ordinal scale for HASI-R scoring. — hasi_bsa_to_ordinal","text":"Integer vector representing ordinal scale values","code":""},{"path":"https://humanpred.github.io/hidradenitis/reference/hasi_bsa_to_ordinal.html","id":"references","dir":"Reference","previous_headings":"","what":"References","title":"Converts BSA percentage to the ordinal scale for HASI-R scoring. — hasi_bsa_to_ordinal","text":"Goldfarb N, Lowes MA, Butt M, King T, Alavi , Kirby JS. Hidradenitis Suppurativa Area Severity Index Revised (HASI-R): psychometric property assessment. Br J Dermatol. 2021 May;184(5):905-912. doi: 10.1111/bjd.19565. Epub 2020 Dec 30. PMID: 32969027; PMCID: PMC8573730.","code":""},{"path":[]},{"path":"https://humanpred.github.io/hidradenitis/reference/hasi_bsa_to_ordinal.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Converts BSA percentage to the ordinal scale for HASI-R scoring. — hasi_bsa_to_ordinal","text":"","code":"hasi_bsa_to_ordinal(c(0, 2, 5, 12, 25, 40, 75)) #> [1] 0 1 2 3 4 5 6"},{"path":"https://humanpred.github.io/hidradenitis/reference/hasi_r_num.html","id":null,"dir":"Reference","previous_headings":"","what":"Calculates the HASI-R score for each patient and visit. — hasi_r_num","title":"Calculates the HASI-R score for each patient and visit. — hasi_r_num","text":"Calculates HASI-R score patient visit.","code":""},{"path":"https://humanpred.github.io/hidradenitis/reference/hasi_r_num.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Calculates the HASI-R score for each patient and visit. — hasi_r_num","text":"","code":"hasi_r_num(   bsa_percent_within_site = NULL,   bsa_percent_total_body = NULL,   bsa_ordinal = NULL,   bodysite = NULL,   inflam_color_chg,   induration,   open_skin_surface,   tunnels )"},{"path":"https://humanpred.github.io/hidradenitis/reference/hasi_r_num.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Calculates the HASI-R score for each patient and visit. — hasi_r_num","text":"bsa_percent_within_site Numeric vector representing BSA percentages (0-100) bsa_percent_total_body Numeric vector representing BSA percentages (0-15, depending site) bsa_ordinal Numeric vector representing BSA values. (0-6) bodysite Optional character vector representing body sites inflam_color_chg Integer vector representing inflammatory color change scores (0-3). induration Integer vector representing induration scores (0-3). open_skin_surface Integer vector representing open skin surface scores (0-3). tunnels Integer vector representing tunnels scores (0-3).","code":""},{"path":"https://humanpred.github.io/hidradenitis/reference/hasi_r_num.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Calculates the HASI-R score for each patient and visit. — hasi_r_num","text":"numeric vector calculated HASI-R score","code":""},{"path":"https://humanpred.github.io/hidradenitis/reference/hasi_r_num.html","id":"references","dir":"Reference","previous_headings":"","what":"References","title":"Calculates the HASI-R score for each patient and visit. — hasi_r_num","text":"Goldfarb N, Lowes MA, Butt M, King T, Alavi , Kirby JS. Hidradenitis Suppurativa Area Severity Index Revised (HASI-R): psychometric property assessment. Br J Dermatol. 2021 May;184(5):905-912. doi: 10.1111/bjd.19565. Epub 2020 Dec 30. PMID: 32969027; PMCID: PMC8573730.","code":""},{"path":[]},{"path":"https://humanpred.github.io/hidradenitis/reference/hasi_r_num.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Calculates the HASI-R score for each patient and visit. — hasi_r_num","text":"","code":"hasi_r_num(   bsa_percent_within_site = c(0, 0, 0, 0, 5, 1, 4.3, 1.2, 6.8, 7.2),   bodysite =     c(\"Right Axilla\", \"Buttocks including Intergluteal Cleft\",       \"Back\", \"Left Thigh\", \"Head & Neck\", \"Left Axilla\",       \"Chest\", \"Pubis & Genitals\", \"Abdomen\", \"Right Thigh\"),   inflam_color_chg = c(0, 0, 0, 0, 2, 3, 1, 3, 2, 0),   induration = c(0, 0, 0, 0, 2, 3, 1, 3, 2, 0),   open_skin_surface = c(0, 0, 0, 0, 2, 3, 1, 3, 2, 0),   tunnels = c(0, 0, 0, 0, 2, 3, 1, 3, 2, 0) ) #> [1] 64"},{"path":"https://humanpred.github.io/hidradenitis/reference/hiscr.html","id":null,"dir":"Reference","previous_headings":"","what":"Calculates HiSCR scores given a percentage parameter. — hiscr","title":"Calculates HiSCR scores given a percentage parameter. — hiscr","text":"Calculates HiSCR scores given percentage parameter.","code":""},{"path":"https://humanpred.github.io/hidradenitis/reference/hiscr.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Calculates HiSCR scores given a percentage parameter. — hiscr","text":"","code":"hiscr(   baseline_abscess,   baseline_nodule,   baseline_fistula,   timepoint_abscess,   timepoint_nodule,   timepoint_fistula,   percentage )"},{"path":"https://humanpred.github.io/hidradenitis/reference/hiscr.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Calculates HiSCR scores given a percentage parameter. — hiscr","text":"baseline_abscess Integer vector representing abscess count baseline. baseline_nodule Integer vector representing inflammatory nodule count baseline. baseline_fistula Integer vector representing draining fistula count baseline. timepoint_abscess Integer vector representing abscess count time point interest. timepoint_nodule Integer vector representing inflammatory nodule count time point interest. timepoint_fistula Integer vector representing draining fistula count time point interest. percentage Numeric value specifying percentage required HiSCR (e.g., 50 HiSCR50, 75 HiSCR75, etc.).","code":""},{"path":"https://humanpred.github.io/hidradenitis/reference/hiscr.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Calculates HiSCR scores given a percentage parameter. — hiscr","text":"logical vector indicating whether HiSCR response achieved set input parameters.","code":""},{"path":"https://humanpred.github.io/hidradenitis/reference/hiscr.html","id":"references","dir":"Reference","previous_headings":"","what":"References","title":"Calculates HiSCR scores given a percentage parameter. — hiscr","text":"Kimball, B et al. “HiSCR (Hidradenitis Suppurativa Clinical Response): novel clinical endpoint evaluate therapeutic outcomes patients hidradenitis suppurativa placebo-controlled portion phase 2 adalimumab study.” Journal European Academy Dermatology Venereology : JEADV vol. 30,6 (2016): 989-94. doi:10.1111/jdv.13216","code":""},{"path":"https://humanpred.github.io/hidradenitis/reference/hiscr.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Calculates HiSCR scores given a percentage parameter. — hiscr","text":"","code":"hiscr(   baseline_abscess = c(3, 2, 4),   baseline_nodule = c(5, 4, 6),   baseline_fistula = c(2, 1, 3),   timepoint_abscess = c(1, 1, 2),   timepoint_nodule = c(2, 3, 2),   timepoint_fistula = c(2, 1, 3),   percentage = 50 ) #> [1]  TRUE FALSE  TRUE"},{"path":"https://humanpred.github.io/hidradenitis/reference/hs_pga_char.html","id":null,"dir":"Reference","previous_headings":"","what":"Converts HS-PGA numerical scores to character values. — hs_pga_char","title":"Converts HS-PGA numerical scores to character values. — hs_pga_char","text":"Converts HS-PGA numerical scores character values.","code":""},{"path":"https://humanpred.github.io/hidradenitis/reference/hs_pga_char.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Converts HS-PGA numerical scores to character values. — hs_pga_char","text":"","code":"hs_pga_char(hs_pga_scores)"},{"path":"https://humanpred.github.io/hidradenitis/reference/hs_pga_char.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Converts HS-PGA numerical scores to character values. — hs_pga_char","text":"hs_pga_scores Integer vector representing HS-PGA scores (1: Clean, 2: Minimal, 3: Mild, 4: Moderate, 5: Severe, 6: Severe).","code":""},{"path":"https://humanpred.github.io/hidradenitis/reference/hs_pga_char.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Converts HS-PGA numerical scores to character values. — hs_pga_char","text":"character vector representing corresponding HS-PGA categories.","code":""},{"path":"https://humanpred.github.io/hidradenitis/reference/hs_pga_char.html","id":"references","dir":"Reference","previous_headings":"","what":"References","title":"Converts HS-PGA numerical scores to character values. — hs_pga_char","text":"Marzano, V et al. “Creation severity index hidradenitis suppurativa includes validated quality--life measure: HIDRAscore.” Journal European Academy Dermatology Venereology : JEADV vol. 34,8 (2020): 1815-1821. doi:10.1111/jdv.16328","code":""},{"path":[]},{"path":"https://humanpred.github.io/hidradenitis/reference/hs_pga_char.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Converts HS-PGA numerical scores to character values. — hs_pga_char","text":"","code":"hs_pga_char(c(1, 2, 3, 4, 5, 6)) #> [1] \"Clean\"       \"Minimal\"     \"Mild\"        \"Moderate\"    \"Severe\"      #> [6] \"Very Severe\""},{"path":"https://humanpred.github.io/hidradenitis/reference/hs_pga_num.html","id":null,"dir":"Reference","previous_headings":"","what":"Calculates HS-PGA scores based on abscess, draining fistula, and inflammatory nodule counts. — hs_pga_num","title":"Calculates HS-PGA scores based on abscess, draining fistula, and inflammatory nodule counts. — hs_pga_num","text":"Calculates HS-PGA scores based abscess, draining fistula, inflammatory nodule counts.","code":""},{"path":"https://humanpred.github.io/hidradenitis/reference/hs_pga_num.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Calculates HS-PGA scores based on abscess, draining fistula, and inflammatory nodule counts. — hs_pga_num","text":"","code":"hs_pga_num(abscess_fistula, inflammatory_nodule, non_inflammatory_nodule)"},{"path":"https://humanpred.github.io/hidradenitis/reference/hs_pga_num.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Calculates HS-PGA scores based on abscess, draining fistula, and inflammatory nodule counts. — hs_pga_num","text":"abscess_fistula Integer vector representing sum abscess draining fistula counts. inflammatory_nodule Integer vector representing inflammatory nodule count. non_inflammatory_nodule Integer vector representing non-inflammatory nodule count.","code":""},{"path":"https://humanpred.github.io/hidradenitis/reference/hs_pga_num.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Calculates HS-PGA scores based on abscess, draining fistula, and inflammatory nodule counts. — hs_pga_num","text":"integer vector representing HS-PGA scores (1: Clean, 2: Minimal, 3: Mild, 4: Moderate, 5: Severe, 6: Severe)","code":""},{"path":"https://humanpred.github.io/hidradenitis/reference/hs_pga_num.html","id":"references","dir":"Reference","previous_headings":"","what":"References","title":"Calculates HS-PGA scores based on abscess, draining fistula, and inflammatory nodule counts. — hs_pga_num","text":"Marzano, V et al. “Creation severity index hidradenitis suppurativa includes validated quality--life measure: HIDRAscore.” Journal European Academy Dermatology Venereology : JEADV vol. 34,8 (2020): 1815-1821. doi:10.1111/jdv.16328","code":""},{"path":[]},{"path":"https://humanpred.github.io/hidradenitis/reference/hs_pga_num.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Calculates HS-PGA scores based on abscess, draining fistula, and inflammatory nodule counts. — hs_pga_num","text":"","code":"hs_pga_num(   abscess_fistula = c(0, 0, 1, 0, 1, 2, 6),   inflammatory_nodule = c(0, 0, 0, 3, 5, 8, 12),   non_inflammatory_nodule = c(0, 1, 0, 0, 0, 0, 0) ) #> [1] 1 2 3 3 4 4 6"},{"path":"https://humanpred.github.io/hidradenitis/reference/ihs4_char.html","id":null,"dir":"Reference","previous_headings":"","what":"Converts IHS4 numerical scores to character values. — ihs4_char","title":"Converts IHS4 numerical scores to character values. — ihs4_char","text":"Converts IHS4 numerical scores character values.","code":""},{"path":"https://humanpred.github.io/hidradenitis/reference/ihs4_char.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Converts IHS4 numerical scores to character values. — ihs4_char","text":"","code":"ihs4_char(ihs4_scores)"},{"path":"https://humanpred.github.io/hidradenitis/reference/ihs4_char.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Converts IHS4 numerical scores to character values. — ihs4_char","text":"ihs4_scores Integer vector representing IHS4 scores (0-3: Mild, 4-10: Moderate, >=11: Severe).","code":""},{"path":"https://humanpred.github.io/hidradenitis/reference/ihs4_char.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Converts IHS4 numerical scores to character values. — ihs4_char","text":"character vector representing corresponding IHS4 categories","code":""},{"path":"https://humanpred.github.io/hidradenitis/reference/ihs4_char.html","id":"references","dir":"Reference","previous_headings":"","what":"References","title":"Converts IHS4 numerical scores to character values. — ihs4_char","text":"Zouboulis, C C et al. “Development validation International Hidradenitis Suppurativa Severity Score System (IHS4), novel dynamic scoring system assess HS severity.” British journal dermatology vol. 177,5 (2017): 1401-1409. doi:10.1111/bjd.15748","code":""},{"path":[]},{"path":"https://humanpred.github.io/hidradenitis/reference/ihs4_char.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Converts IHS4 numerical scores to character values. — ihs4_char","text":"","code":"ihs4_char(c(2, 5, 12)) #> [1] \"Mild\"     \"Moderate\" \"Severe\""},{"path":"https://humanpred.github.io/hidradenitis/reference/ihs4_num.html","id":null,"dir":"Reference","previous_headings":"","what":"Calculates IHS4 scores based on abscess, draining fistula, and inflammatory nodule counts. — ihs4_num","title":"Calculates IHS4 scores based on abscess, draining fistula, and inflammatory nodule counts. — ihs4_num","text":"Calculates IHS4 scores based abscess, draining fistula, inflammatory nodule counts.","code":""},{"path":"https://humanpred.github.io/hidradenitis/reference/ihs4_num.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Calculates IHS4 scores based on abscess, draining fistula, and inflammatory nodule counts. — ihs4_num","text":"","code":"ihs4_num(nodules, abscesses, draining_tunnels)"},{"path":"https://humanpred.github.io/hidradenitis/reference/ihs4_num.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Calculates IHS4 scores based on abscess, draining fistula, and inflammatory nodule counts. — ihs4_num","text":"nodules Integer vector representing nodule count abscesses Integer vector representing abscess count draining_tunnels Integer vector representing draining tunnel count","code":""},{"path":"https://humanpred.github.io/hidradenitis/reference/ihs4_num.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Calculates IHS4 scores based on abscess, draining fistula, and inflammatory nodule counts. — ihs4_num","text":"integer vector representing IHS4 scores (0-3: Mild, 4-10: Moderate, 11- : Severe).","code":""},{"path":"https://humanpred.github.io/hidradenitis/reference/ihs4_num.html","id":"references","dir":"Reference","previous_headings":"","what":"References","title":"Calculates IHS4 scores based on abscess, draining fistula, and inflammatory nodule counts. — ihs4_num","text":"Zouboulis, C C et al. “Development validation International Hidradenitis Suppurativa Severity Score System (IHS4), novel dynamic scoring system assess HS severity.” British journal dermatology vol. 177,5 (2017): 1401-1409. doi:10.1111/bjd.15748","code":""},{"path":[]},{"path":"https://humanpred.github.io/hidradenitis/reference/ihs4_num.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Calculates IHS4 scores based on abscess, draining fistula, and inflammatory nodule counts. — ihs4_num","text":"","code":"ihs4_num(   nodules = c(5, 3, 2),   abscesses = c(2, 1, 0),   draining_tunnels = c(1, 2, 3) ) #> [1] 13 13 14"},{"path":"https://humanpred.github.io/hidradenitis/news/index.html","id":"hidradenitis-100","dir":"Changelog","previous_headings":"","what":"hidradenitis 1.0.0","title":"hidradenitis 1.0.0","text":"CRAN release: 2024-07-04 Initial CRAN submission.","code":""}]
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GNU General Public License permit incorporating program proprietary programs. program subroutine library, may consider useful permit linking proprietary applications library. want , use GNU Lesser General Public License instead License. first, please read <http://www.gnu.org/philosophy/--lgpl.html>.","code":"<one line to give the program's name and a brief idea of what it does.> Copyright (C) <year>  <name of author>  This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.  This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License for more details.  You should have received a copy of the GNU General Public License along with this program.  If not, see <http://www.gnu.org/licenses/>. <program>  Copyright (C) <year>  <name of author> This program comes with ABSOLUTELY NO WARRANTY; for details type 'show w'. This is free software, and you are welcome to redistribute it under certain conditions; type 'show c' for details."},{"path":"https://billdenney.github.io/hidradenitis/authors.html","id":null,"dir":"","previous_headings":"","what":"Authors","title":"Authors and Citation","text":"Bill Denney. Author, maintainer. Devon Bartlett. Author.","code":""},{"path":"https://billdenney.github.io/hidradenitis/authors.html","id":"citation","dir":"","previous_headings":"","what":"Citation","title":"Authors and Citation","text":"Denney B, Bartlett D (2024). hidradenitis: Calculate Clinical Scores Hidradenitis Suppurativa (HS), Dermatologic Disease. R package version 1.0.0, https://billdenney.github.io/hidradenitis/.","code":"@Manual{,   title = {hidradenitis: Calculate Clinical Scores for Hidradenitis Suppurativa (HS), a Dermatologic Disease},   author = {Bill Denney and Devon Bartlett},   year = {2024},   note = {R package version 1.0.0},   url = {https://billdenney.github.io/hidradenitis/}, }"},{"path":"https://billdenney.github.io/hidradenitis/index.html","id":"hidradenitis","dir":"","previous_headings":"","what":"Calculate Clinical Scores for Hidradenitis Suppurativa (HS), a Dermatologic Disease","title":"Calculate Clinical Scores for Hidradenitis Suppurativa (HS), a Dermatologic Disease","text":"goal hidradenitis package support use interpretation clinical scores hidradenitis suppurativa.","code":""},{"path":[]},{"path":"https://billdenney.github.io/hidradenitis/index.html","id":"stable-version","dir":"","previous_headings":"Installation","what":"Stable version","title":"Calculate Clinical Scores for Hidradenitis Suppurativa (HS), a Dermatologic Disease","text":"can install stable version hidradenitis CRAN :","code":"install.packages(\"devtools\")"},{"path":"https://billdenney.github.io/hidradenitis/index.html","id":"development-version","dir":"","previous_headings":"Installation","what":"Development version","title":"Calculate Clinical Scores for Hidradenitis Suppurativa (HS), a Dermatologic Disease","text":"can install development version hidradenitis GitHub :","code":"# install.packages(\"devtools\") devtools::install_github(\"billdenney/hidradenitis\")"},{"path":"https://billdenney.github.io/hidradenitis/index.html","id":"example","dir":"","previous_headings":"","what":"Example","title":"Calculate Clinical Scores for Hidradenitis Suppurativa (HS), a Dermatologic Disease","text":"basic example shows solve common problem:","code":"library(hidradenitis)  hasi_r_num(   bsa_percent_within_site = c(0, 0, 0, 0, 5, 1, 4.3, 1.2, 6.8, 7.2),   bodysite =     c(\"Right Axilla\", \"Buttocks including Intergluteal Cleft\",       \"Back\", \"Left Thigh\", \"Head & Neck\", \"Left Axilla\",       \"Chest\", \"Pubis & Genitals\", \"Abdomen\", \"Right Thigh\"),   inflam_color_chg = c(0, 0, 0, 0, 2, 3, 1, 3, 2, 0),   induration = c(0, 0, 0, 0, 2, 3, 1, 3, 2, 0),   open_skin_surface = c(0, 0, 0, 0, 2, 3, 1, 3, 2, 0),   tunnels = c(0, 0, 0, 0, 2, 3, 1, 3, 2, 0) )  hiscr(   baseline_abscess = c(3, 2, 4),   baseline_nodule = c(5, 4, 6),   baseline_fistula = c(2, 1, 3),   timepoint_abscess = c(1, 1, 2),   timepoint_nodule = c(2, 3, 2),   timepoint_fistula = c(2, 1, 3),   percentage = 50 )  hs_pga <-   hs_pga_num(     abscess_fistula = c(0, 0, 1, 0, 1, 2, 6),     inflammatory_nodule = c(0, 0, 0, 3, 5, 8, 12),     non_inflammatory_nodule = c(0, 1, 0, 0, 0, 0, 0)   ) hs_pga_char(hs_pga)  ihs4 <-   ihs4_num(     nodules = c(5, 3, 2),     abscesses = c(2, 1, 0),     draining_tunnels = c(1, 2, 3)   ) ihs4_char(ihs4)"},{"path":"https://billdenney.github.io/hidradenitis/reference/hasi_bsa_to_ordinal.html","id":null,"dir":"Reference","previous_headings":"","what":"Converts BSA percentage to the ordinal scale for HASI-R scoring. — hasi_bsa_to_ordinal","title":"Converts BSA percentage to the ordinal scale for HASI-R scoring. — hasi_bsa_to_ordinal","text":"Converts BSA percentage ordinal scale HASI-R scoring.","code":""},{"path":"https://billdenney.github.io/hidradenitis/reference/hasi_bsa_to_ordinal.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Converts BSA percentage to the ordinal scale for HASI-R scoring. — hasi_bsa_to_ordinal","text":"","code":"hasi_bsa_to_ordinal(   bsa_percent_within_site = NULL,   bsa_percent_total_body = NULL,   bsa_ordinal = NULL,   bodysite = NULL )"},{"path":"https://billdenney.github.io/hidradenitis/reference/hasi_bsa_to_ordinal.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Converts BSA percentage to the ordinal scale for HASI-R scoring. — hasi_bsa_to_ordinal","text":"bsa_percent_within_site Numeric vector representing BSA percentages (0-100) bsa_percent_total_body Numeric vector representing BSA percentages (0-15, depending site) bsa_ordinal Numeric vector representing BSA values. (0-6) bodysite Optional character vector representing body sites","code":""},{"path":"https://billdenney.github.io/hidradenitis/reference/hasi_bsa_to_ordinal.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Converts BSA percentage to the ordinal scale for HASI-R scoring. — hasi_bsa_to_ordinal","text":"Integer vector representing ordinal scale values","code":""},{"path":"https://billdenney.github.io/hidradenitis/reference/hasi_bsa_to_ordinal.html","id":"references","dir":"Reference","previous_headings":"","what":"References","title":"Converts BSA percentage to the ordinal scale for HASI-R scoring. — hasi_bsa_to_ordinal","text":"Goldfarb N, Lowes MA, Butt M, King T, Alavi , Kirby JS. Hidradenitis Suppurativa Area Severity Index Revised (HASI-R): psychometric property assessment. Br J Dermatol. 2021 May;184(5):905-912. doi: 10.1111/bjd.19565. Epub 2020 Dec 30. PMID: 32969027; PMCID: PMC8573730.","code":""},{"path":[]},{"path":"https://billdenney.github.io/hidradenitis/reference/hasi_bsa_to_ordinal.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Converts BSA percentage to the ordinal scale for HASI-R scoring. — hasi_bsa_to_ordinal","text":"","code":"hasi_bsa_to_ordinal(c(0, 2, 5, 12, 25, 40, 75)) #> [1] 0 1 2 3 4 5 6"},{"path":"https://billdenney.github.io/hidradenitis/reference/hasi_r_num.html","id":null,"dir":"Reference","previous_headings":"","what":"Calculates the HASI-R score for each patient and visit. — hasi_r_num","title":"Calculates the HASI-R score for each patient and visit. — hasi_r_num","text":"Calculates HASI-R score patient visit.","code":""},{"path":"https://billdenney.github.io/hidradenitis/reference/hasi_r_num.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Calculates the HASI-R score for each patient and visit. — hasi_r_num","text":"","code":"hasi_r_num(   bsa_percent_within_site = NULL,   bsa_percent_total_body = NULL,   bsa_ordinal = NULL,   bodysite = NULL,   inflam_color_chg,   induration,   open_skin_surface,   tunnels )"},{"path":"https://billdenney.github.io/hidradenitis/reference/hasi_r_num.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Calculates the HASI-R score for each patient and visit. — hasi_r_num","text":"bsa_percent_within_site Numeric vector representing BSA percentages (0-100) bsa_percent_total_body Numeric vector representing BSA percentages (0-15, depending site) bsa_ordinal Numeric vector representing BSA values. (0-6) bodysite Optional character vector representing body sites inflam_color_chg Integer vector representing inflammatory color change scores (0-3). induration Integer vector representing induration scores (0-3). open_skin_surface Integer vector representing open skin surface scores (0-3). tunnels Integer vector representing tunnels scores (0-3).","code":""},{"path":"https://billdenney.github.io/hidradenitis/reference/hasi_r_num.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Calculates the HASI-R score for each patient and visit. — hasi_r_num","text":"numeric vector calculated HASI-R score","code":""},{"path":"https://billdenney.github.io/hidradenitis/reference/hasi_r_num.html","id":"references","dir":"Reference","previous_headings":"","what":"References","title":"Calculates the HASI-R score for each patient and visit. — hasi_r_num","text":"Goldfarb N, Lowes MA, Butt M, King T, Alavi , Kirby JS. Hidradenitis Suppurativa Area Severity Index Revised (HASI-R): psychometric property assessment. Br J Dermatol. 2021 May;184(5):905-912. doi: 10.1111/bjd.19565. Epub 2020 Dec 30. PMID: 32969027; PMCID: PMC8573730.","code":""},{"path":[]},{"path":"https://billdenney.github.io/hidradenitis/reference/hasi_r_num.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Calculates the HASI-R score for each patient and visit. — hasi_r_num","text":"","code":"hasi_r_num(   bsa_percent_within_site = c(0, 0, 0, 0, 5, 1, 4.3, 1.2, 6.8, 7.2),   bodysite =     c(\"Right Axilla\", \"Buttocks including Intergluteal Cleft\",       \"Back\", \"Left Thigh\", \"Head & Neck\", \"Left Axilla\",       \"Chest\", \"Pubis & Genitals\", \"Abdomen\", \"Right Thigh\"),   inflam_color_chg = c(0, 0, 0, 0, 2, 3, 1, 3, 2, 0),   induration = c(0, 0, 0, 0, 2, 3, 1, 3, 2, 0),   open_skin_surface = c(0, 0, 0, 0, 2, 3, 1, 3, 2, 0),   tunnels = c(0, 0, 0, 0, 2, 3, 1, 3, 2, 0) ) #> [1] 64"},{"path":"https://billdenney.github.io/hidradenitis/reference/hiscr.html","id":null,"dir":"Reference","previous_headings":"","what":"Calculates HiSCR scores given a percentage parameter. — hiscr","title":"Calculates HiSCR scores given a percentage parameter. — hiscr","text":"Calculates HiSCR scores given percentage parameter.","code":""},{"path":"https://billdenney.github.io/hidradenitis/reference/hiscr.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Calculates HiSCR scores given a percentage parameter. — hiscr","text":"","code":"hiscr(   baseline_abscess,   baseline_nodule,   baseline_fistula,   timepoint_abscess,   timepoint_nodule,   timepoint_fistula,   percentage )"},{"path":"https://billdenney.github.io/hidradenitis/reference/hiscr.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Calculates HiSCR scores given a percentage parameter. — hiscr","text":"baseline_abscess Integer vector representing abscess count baseline. baseline_nodule Integer vector representing inflammatory nodule count baseline. baseline_fistula Integer vector representing draining fistula count baseline. timepoint_abscess Integer vector representing abscess count time point interest. timepoint_nodule Integer vector representing inflammatory nodule count time point interest. timepoint_fistula Integer vector representing draining fistula count time point interest. percentage Numeric value specifying percentage required HiSCR (e.g., 50 HiSCR50, 75 HiSCR75, etc.).","code":""},{"path":"https://billdenney.github.io/hidradenitis/reference/hiscr.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Calculates HiSCR scores given a percentage parameter. — hiscr","text":"logical vector indicating whether HiSCR response achieved set input parameters.","code":""},{"path":"https://billdenney.github.io/hidradenitis/reference/hiscr.html","id":"references","dir":"Reference","previous_headings":"","what":"References","title":"Calculates HiSCR scores given a percentage parameter. — hiscr","text":"Kimball, B et al. “HiSCR (Hidradenitis Suppurativa Clinical Response): novel clinical endpoint evaluate therapeutic outcomes patients hidradenitis suppurativa placebo-controlled portion phase 2 adalimumab study.” Journal European Academy Dermatology Venereology : JEADV vol. 30,6 (2016): 989-94. doi:10.1111/jdv.13216","code":""},{"path":"https://billdenney.github.io/hidradenitis/reference/hiscr.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Calculates HiSCR scores given a percentage parameter. — hiscr","text":"","code":"hiscr(   baseline_abscess = c(3, 2, 4),   baseline_nodule = c(5, 4, 6),   baseline_fistula = c(2, 1, 3),   timepoint_abscess = c(1, 1, 2),   timepoint_nodule = c(2, 3, 2),   timepoint_fistula = c(2, 1, 3),   percentage = 50 ) #> [1]  TRUE FALSE  TRUE"},{"path":"https://billdenney.github.io/hidradenitis/reference/hs_pga_char.html","id":null,"dir":"Reference","previous_headings":"","what":"Converts HS-PGA numerical scores to character values. — hs_pga_char","title":"Converts HS-PGA numerical scores to character values. — hs_pga_char","text":"Converts HS-PGA numerical scores character values.","code":""},{"path":"https://billdenney.github.io/hidradenitis/reference/hs_pga_char.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Converts HS-PGA numerical scores to character values. — hs_pga_char","text":"","code":"hs_pga_char(hs_pga_scores)"},{"path":"https://billdenney.github.io/hidradenitis/reference/hs_pga_char.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Converts HS-PGA numerical scores to character values. — hs_pga_char","text":"hs_pga_scores Integer vector representing HS-PGA scores (1: Clean, 2: Minimal, 3: Mild, 4: Moderate, 5: Severe, 6: Severe).","code":""},{"path":"https://billdenney.github.io/hidradenitis/reference/hs_pga_char.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Converts HS-PGA numerical scores to character values. — hs_pga_char","text":"character vector representing corresponding HS-PGA categories.","code":""},{"path":"https://billdenney.github.io/hidradenitis/reference/hs_pga_char.html","id":"references","dir":"Reference","previous_headings":"","what":"References","title":"Converts HS-PGA numerical scores to character values. — hs_pga_char","text":"Marzano, V et al. “Creation severity index hidradenitis suppurativa includes validated quality--life measure: HIDRAscore.” Journal European Academy Dermatology Venereology : JEADV vol. 34,8 (2020): 1815-1821. doi:10.1111/jdv.16328","code":""},{"path":[]},{"path":"https://billdenney.github.io/hidradenitis/reference/hs_pga_char.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Converts HS-PGA numerical scores to character values. — hs_pga_char","text":"","code":"hs_pga_char(c(1, 2, 3, 4, 5, 6)) #> [1] \"Clean\"       \"Minimal\"     \"Mild\"        \"Moderate\"    \"Severe\"      #> [6] \"Very Severe\""},{"path":"https://billdenney.github.io/hidradenitis/reference/hs_pga_num.html","id":null,"dir":"Reference","previous_headings":"","what":"Calculates HS-PGA scores based on abscess, draining fistula, and inflammatory nodule counts. — hs_pga_num","title":"Calculates HS-PGA scores based on abscess, draining fistula, and inflammatory nodule counts. — hs_pga_num","text":"Calculates HS-PGA scores based abscess, draining fistula, inflammatory nodule counts.","code":""},{"path":"https://billdenney.github.io/hidradenitis/reference/hs_pga_num.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Calculates HS-PGA scores based on abscess, draining fistula, and inflammatory nodule counts. — hs_pga_num","text":"","code":"hs_pga_num(abscess_fistula, inflammatory_nodule, non_inflammatory_nodule)"},{"path":"https://billdenney.github.io/hidradenitis/reference/hs_pga_num.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Calculates HS-PGA scores based on abscess, draining fistula, and inflammatory nodule counts. — hs_pga_num","text":"abscess_fistula Integer vector representing sum abscess draining fistula counts. inflammatory_nodule Integer vector representing inflammatory nodule count. non_inflammatory_nodule Integer vector representing non-inflammatory nodule count.","code":""},{"path":"https://billdenney.github.io/hidradenitis/reference/hs_pga_num.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Calculates HS-PGA scores based on abscess, draining fistula, and inflammatory nodule counts. — hs_pga_num","text":"integer vector representing HS-PGA scores (1: Clean, 2: Minimal, 3: Mild, 4: Moderate, 5: Severe, 6: Severe)","code":""},{"path":"https://billdenney.github.io/hidradenitis/reference/hs_pga_num.html","id":"references","dir":"Reference","previous_headings":"","what":"References","title":"Calculates HS-PGA scores based on abscess, draining fistula, and inflammatory nodule counts. — hs_pga_num","text":"Marzano, V et al. “Creation severity index hidradenitis suppurativa includes validated quality--life measure: HIDRAscore.” Journal European Academy Dermatology Venereology : JEADV vol. 34,8 (2020): 1815-1821. doi:10.1111/jdv.16328","code":""},{"path":[]},{"path":"https://billdenney.github.io/hidradenitis/reference/hs_pga_num.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Calculates HS-PGA scores based on abscess, draining fistula, and inflammatory nodule counts. — hs_pga_num","text":"","code":"hs_pga_num(   abscess_fistula = c(0, 0, 1, 0, 1, 2, 6),   inflammatory_nodule = c(0, 0, 0, 3, 5, 8, 12),   non_inflammatory_nodule = c(0, 1, 0, 0, 0, 0, 0) ) #> [1] 1 2 3 3 4 4 6"},{"path":"https://billdenney.github.io/hidradenitis/reference/ihs4_char.html","id":null,"dir":"Reference","previous_headings":"","what":"Converts IHS4 numerical scores to character values. — ihs4_char","title":"Converts IHS4 numerical scores to character values. — ihs4_char","text":"Converts IHS4 numerical scores character values.","code":""},{"path":"https://billdenney.github.io/hidradenitis/reference/ihs4_char.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Converts IHS4 numerical scores to character values. — ihs4_char","text":"","code":"ihs4_char(ihs4_scores)"},{"path":"https://billdenney.github.io/hidradenitis/reference/ihs4_char.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Converts IHS4 numerical scores to character values. — ihs4_char","text":"ihs4_scores Integer vector representing IHS4 scores (0-3: Mild, 4-10: Moderate, >=11: Severe).","code":""},{"path":"https://billdenney.github.io/hidradenitis/reference/ihs4_char.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Converts IHS4 numerical scores to character values. — ihs4_char","text":"character vector representing corresponding IHS4 categories","code":""},{"path":"https://billdenney.github.io/hidradenitis/reference/ihs4_char.html","id":"references","dir":"Reference","previous_headings":"","what":"References","title":"Converts IHS4 numerical scores to character values. — ihs4_char","text":"Zouboulis, C C et al. “Development validation International Hidradenitis Suppurativa Severity Score System (IHS4), novel dynamic scoring system assess HS severity.” British journal dermatology vol. 177,5 (2017): 1401-1409. doi:10.1111/bjd.15748","code":""},{"path":[]},{"path":"https://billdenney.github.io/hidradenitis/reference/ihs4_char.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Converts IHS4 numerical scores to character values. — ihs4_char","text":"","code":"ihs4_char(c(2, 5, 12)) #> [1] \"Mild\"     \"Moderate\" \"Severe\""},{"path":"https://billdenney.github.io/hidradenitis/reference/ihs4_num.html","id":null,"dir":"Reference","previous_headings":"","what":"Calculates IHS4 scores based on abscess, draining fistula, and inflammatory nodule counts. — ihs4_num","title":"Calculates IHS4 scores based on abscess, draining fistula, and inflammatory nodule counts. — ihs4_num","text":"Calculates IHS4 scores based abscess, draining fistula, inflammatory nodule counts.","code":""},{"path":"https://billdenney.github.io/hidradenitis/reference/ihs4_num.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Calculates IHS4 scores based on abscess, draining fistula, and inflammatory nodule counts. — ihs4_num","text":"","code":"ihs4_num(nodules, abscesses, draining_tunnels)"},{"path":"https://billdenney.github.io/hidradenitis/reference/ihs4_num.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Calculates IHS4 scores based on abscess, draining fistula, and inflammatory nodule counts. — ihs4_num","text":"nodules Integer vector representing nodule count abscesses Integer vector representing abscess count draining_tunnels Integer vector representing draining tunnel count","code":""},{"path":"https://billdenney.github.io/hidradenitis/reference/ihs4_num.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Calculates IHS4 scores based on abscess, draining fistula, and inflammatory nodule counts. — ihs4_num","text":"integer vector representing IHS4 scores (0-3: Mild, 4-10: Moderate, 11- : Severe).","code":""},{"path":"https://billdenney.github.io/hidradenitis/reference/ihs4_num.html","id":"references","dir":"Reference","previous_headings":"","what":"References","title":"Calculates IHS4 scores based on abscess, draining fistula, and inflammatory nodule counts. — ihs4_num","text":"Zouboulis, C C et al. “Development validation International Hidradenitis Suppurativa Severity Score System (IHS4), novel dynamic scoring system assess HS severity.” British journal dermatology vol. 177,5 (2017): 1401-1409. doi:10.1111/bjd.15748","code":""},{"path":[]},{"path":"https://billdenney.github.io/hidradenitis/reference/ihs4_num.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Calculates IHS4 scores based on abscess, draining fistula, and inflammatory nodule counts. — ihs4_num","text":"","code":"ihs4_num(   nodules = c(5, 3, 2),   abscesses = c(2, 1, 0),   draining_tunnels = c(1, 2, 3) ) #> [1] 13 13 14"},{"path":"https://billdenney.github.io/hidradenitis/news/index.html","id":"hidradenitis-100","dir":"Changelog","previous_headings":"","what":"hidradenitis 1.0.0","title":"hidradenitis 1.0.0","text":"CRAN release: 2024-07-04 Initial CRAN submission.","code":""}]
diff --git a/sitemap.xml b/sitemap.xml
index f68f91c..bba7fcc 100644
--- a/sitemap.xml
+++ b/sitemap.xml
@@ -1,16 +1,16 @@
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+<url><loc>https://billdenney.github.io/hidradenitis/404.html</loc></url>
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+<url><loc>https://billdenney.github.io/hidradenitis/reference/hs_pga_char.html</loc></url>
+<url><loc>https://billdenney.github.io/hidradenitis/reference/hs_pga_num.html</loc></url>
+<url><loc>https://billdenney.github.io/hidradenitis/reference/ihs4_char.html</loc></url>
+<url><loc>https://billdenney.github.io/hidradenitis/reference/ihs4_num.html</loc></url>
+<url><loc>https://billdenney.github.io/hidradenitis/reference/index.html</loc></url>
 </urlset>
 
