bsb/pyproject.toml at main · igorcantele/bsb · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
[build-system]
requires = ["flit_core >=3.2,<4"]
build-backend = "flit_core.buildapi"

[project]
name = "bsb-core"
authors = [{ name = "Robin De Schepper", email = "robingilbert.deschepper@unipv.it" }]
readme = "README.md"
license = { file = "LICENSE" }
classifiers = ["License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)"]
requires-python = ">=3.9"
dynamic = ["version", "description"]
dependencies = [
    "numpy~=1.19",
    "scipy~=1.5",
    "scikit-learn~=1.0",
    "colour~=0.1",
    "errr~=1.2",
    "rtree~=1.0",
    "psutil~=5.8",
    "pynrrd~=1.0",
    "morphio~=3.3",
    "toml",
    "requests~=2.30",
    "urllib3~=2.0",
    "appdirs~=1.4",
    "neo[nixio]",
    "tqdm~=4.50",
    "dashing@git+https://github.com/Helveg/dashing.git",
    "shortuuid",
    "quantities",
    "exceptiongroup",
]

[tool.flit.module]
# The `bsb-core` package installs the `bsb` Python module
name = "bsb"

[project.urls]
Home = "https://github.com/dbbs-lab/bsb"
Documentation = "https://bsb.readthedocs.io/"
"Bug Tracker" = "https://github.com/dbbs-lab/bsb/issues/"
"Source Code" = "https://github.com/dbbs-lab/bsb/"

[project.scripts]
bsb = "bsb.cli:handle_cli"

[project.entry-points."bsb.storage.engines"]
fs = "bsb.storage.fs"

[project.entry-points."bsb.commands"]
commands = "bsb.cli.commands._commands"
projects = "bsb.cli.commands._projects"

[project.entry-points."bsb.options"]
verbosity = "bsb._options:verbosity"
sudo = "bsb._options:sudo"
version = "bsb._options:version"
config = "bsb._options:config"
profiling = "bsb._options:profiling"
debug_pool = "bsb._options:debug_pool"

[project.optional-dependencies]
parallel = [
    "mpi4py~=3.0",
    "mpipool>=2.2.1,<3",
    "mpilock~=1.1"
]
test = [
    "bsb-arbor==0.0.0b1",
    "bsb-hdf5==1.0.0b4",
    "bsb-test==0.0.0b15",
    "coverage~=7.3",
]
docs = [
    "sphinx~=7.0",
    "furo~=2023.9",
    "sphinxemoji~=0.2.0",
    "sphinx_design~=0.5.0",
    "sphinx-copybutton~=0.5.0",
    "sphinxext-bsb~=0.2.1",
    "bsb-json>=0.0.0b5",
    "bsb-yaml>=0.0.0b4",
]
dev = [
    "build~=1.0",
    "twine~=4.0",
    "pre-commit~=3.5",
    "black~=24.1.1",
    "isort~=5.12",
    "snakeviz~=2.1",
    "bump-my-version~=0.18"
]

[tool.black]
line-length = 90

[tool.isort]
profile = "black"

[tool.bumpversion]
current_version = "4.0.0-b10"
parse = """(?x)
    (?P<major>0|[1-9]\\d*)\\.
    (?P<minor>0|[1-9]\\d*)\\.
    (?P<patch>0|[1-9]\\d*)
    (?:
        -                             # dash seperator for pre-release section
        (?P<pre_l>[a-zA-Z-]+)         # pre-release label
        (?P<pre_n>0|[1-9]\\d*)        # pre-release version number
    )?                                # pre-release section is optional
"""
serialize = [
    "{major}.{minor}.{patch}-{pre_l}{pre_n}",
    "{major}.{minor}.{patch}",
]
search = "{current_version}"
replace = "{new_version}"
regex = false
ignore_missing_version = false
tag = true
sign_tags = false
tag_name = "v{new_version}"
tag_message = "Bump version: {current_version} → {new_version}"
allow_dirty = false
commit = true
message = "Bump version: {current_version} → {new_version}"
commit_args = "--no-verify"

[tool.bumpversion.parts.pre_l]
values = ["dev", "a", "b", "rc", "final"]
optional_value = "final"

[[tool.bumpversion.files]]
filename = "bsb/__init__.py"