chore: ran pre-commit hooks

Author: ntamas

.coveragerc

@@ -6,4 +6,4 @@ exclude_lines =
     pragma: no cover
     if TYPE_CHECKING:
     ^\s*\.\.\.$
-	raise NotImplementedError
+	raise NotImplementedError

.github/workflows/docs.yml

@@ -3,7 +3,7 @@ name: docs
 on:
   push:
     branches:
-      - master 
+      - master
       - main
 
 permissions:
@@ -17,7 +17,7 @@ jobs:
       - uses: actions/setup-python@v4
         with:
           python-version: 3.x
-      - run: echo "cache_id=$(date --utc '+%V')" >> $GITHUB_ENV 
+      - run: echo "cache_id=$(date --utc '+%V')" >> $GITHUB_ENV
       - uses: actions/cache@v3
         with:
           key: mkdocs-material-${{ env.cache_id }}

docs/fragments/_include/write_graph_names.txt

@@ -1,4 +1,4 @@
     names: name of the string vertex attribute that stores the names of the
         vertices to be written into the output file. A warning will be thrown if
         the attribute does not exist or is not a string attribute, and the file
-        will contain numeric vertex IDs instead if this is the case.
+        will contain numeric vertex IDs instead if this is the case.

docs/fragments/_include/write_graph_outstream.txt

@@ -1,3 +1,3 @@
     outstream: the output file or stream to write the graph to. May be a
         filename, a path-like object or a file-like object if it is backed
-        by a low-level file handle
+        by a low-level file handle

docs/fragments/_include/write_graph_weights.txt

@@ -1,4 +1,4 @@
     weights: name of the edge attribute that stores the weights of the edges
         to be written into the output file. A warning will be thrown if the
         attribute does not exist or is not a numeric attribute, and all weights
-        will be assumed to be equal to 1 if this is the case.
+        will be assumed to be equal to 1 if this is the case.

pyproject.toml

@@ -39,9 +39,9 @@ addopts = "--cov-config=.coveragerc"
 lint.ignore = ["F405"]
 lint.select = ["B", "C", "E", "F", "W"]
 
-[tool.ruff.per-file-ignores]
+[tool.ruff.lint.per-file-ignores]
 "src/igraph_ctypes/_internal/enums.py" = ["E501"]
-"src/igraph_ctypes/_internal/functions.py" = ["E501"]
+"src/igraph_ctypes/_internal/functions.py" = ["E501", "E741"]
 "src/igraph_ctypes/_internal/lib.py" = ["E501"]
 
 [tool.tox]

src/codegen/internal_lib.py.in

@@ -573,4 +573,3 @@ igraph_set_warning_handler.restype = igraph_warning_handler_t
 igraph_set_warning_handler.argtypes = [igraph_warning_handler_t]
 
 # The rest of this file is generated by Stimulus
-

src/codegen/reexport.py.in

@@ -4,4 +4,3 @@
 # be used by end users of the library.
 #
 # The rest of this file is generated
-

src/igraph_ctypes/_internal/attributes/map.py

@@ -86,9 +86,7 @@ def set(
 
         if isinstance(value, (bytes, str)):
             # strings and bytes are iterable but they are treated as if not
-            avl = AttributeValueList(
-                [value] * length, type=type, fixed_length=True
-            )  # type: ignore
+            avl = AttributeValueList([value] * length, type=type, fixed_length=True)  # type: ignore
         elif isinstance(value, Iterable):
             # iterables are mapped to an AttributeValueList. Note that this
             # also takes care of copying existing AttributeValueList instances
@@ -100,9 +98,7 @@ def set(
         else:
             # all other values are assumed to be a common value for all
             # vertices or edges
-            avl = AttributeValueList(
-                [value] * length, type=type, fixed_length=True
-            )  # type: ignore
+            avl = AttributeValueList([value] * length, type=type, fixed_length=True)  # type: ignore
 
         assert avl.fixed_length
         assert not _check_length or len(avl) == length

src/igraph_ctypes/_internal/attributes/value_list.py

@@ -281,18 +281,17 @@ def __delitem__(self, index: IndexLike) -> None:  # noqa: C901
         raise RuntimeError("cannot delete items from a fixed-length list")
 
     @overload
-    def __getitem__(self, index: IntLike) -> T | None:
-        ...
+    def __getitem__(self, index: IntLike) -> T | None: ...
 
     @overload
     def __getitem__(
         self: C, index: slice | EllipsisType | Sequence[BoolLike | IntLike]
-    ) -> C:
-        ...
+    ) -> C: ...
 
     @overload
-    def __getitem__(self, index: NDArray[np.bool_] | NDArray[np.integer]) -> NDArray:
-        ...
+    def __getitem__(
+        self, index: NDArray[np.bool_] | NDArray[np.integer]
+    ) -> NDArray: ...
 
     def __getitem__(self, index: IndexLike):
         items = self._items
@@ -308,7 +307,9 @@ def __getitem__(self, index: IndexLike):
 
         elif isinstance(index, Sequence):
             return self.__class__(
-                self._items[index,], type=self._type, _wrap=True  # type: ignore
+                self._items[index,],
+                type=self._type,
+                _wrap=True,  # type: ignore
             )
 
         elif isinstance(index, np.ndarray):

src/igraph_ctypes/_internal/errors.py

@@ -56,7 +56,7 @@ def igraph_error_t_to_python_exception_class(code: int) -> Optional[Type[Excepti
 
 
 def python_exception_to_igraph_error_t(
-    exc: Optional[Union[Exception, Type[Exception]]]
+    exc: Optional[Union[Exception, Type[Exception]]],
 ) -> int:
     """Converts a Python exception class into an appropriate igraph error code.
 

src/igraph_ctypes/_internal/rng.py

@@ -1,14 +1,11 @@
 from ctypes import pointer
 from functools import partial
-from numpy.random import Generator, PCG64
+from numpy.random import Generator
 from typing import Callable, Optional
 
 from .lib import igraph_rng_set_default
 from .types import (
     igraph_rng_type_t,
-    np_type_of_igraph_integer_t,
-    np_type_of_igraph_real_t,
-    np_type_of_igraph_uint_t,
 )
 from .wrappers import _RNG
 

src/igraph_ctypes/_internal/utils.py

@@ -60,7 +60,7 @@ def wrapped(*args, **kwds) -> int:
 
 
 def protect_with(
-    handler: Callable[[int], int]
+    handler: Callable[[int], int],
 ) -> Callable[[Callable[..., None]], Callable[..., int]]:
     """Decorator factory that creates a decorator that takes a function that
     can potentially throw a Python exception, and turns it into another function