Visualization.Rmd

---
title: "Visualization"
author: "Leo Lahti, Sudarshan Shetty et al. `r Sys.Date()`"
bibliography: 
- bibliography.bib
output:
  BiocStyle::html_document:
    number_sections: no
    toc: yes
    toc_depth: 4
    toc_float: true
    self_contained: true
    thumbnails: true
    lightbox: true
    gallery: true
    use_bookdown: false
    highlight: haddock
---
<!--
  %\VignetteEngine{knitr::rmarkdown}
  %\VignetteIndexEntry{microbiome tutorial - stability}
  %\usepackage[utf8]{inputenc}
  %\VignetteEncoding{UTF-8}  
-->


# Experimental functions


**Time series for individual subjects**

```{r homogeneity-timeseries, message=FALSE, warning=FALSE, fig.height=5, fig.height=5, eval=FALSE}
source(system.file("extdata/plot_longitudinal.R", package = "microbiome"))
p <- plot_longitudinal(pseq, "Dialister", subject = "831", tipping.point = 0.5)
print(p)
```