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Rather than using BSgenome or DNAStringSet, one should be able to provide a bigwig track (imported as RleList) to sign eigenvectors when annotating compartments with get compartments function, eg a coverage track of the GC content.
Rather than using BSgenome or DNAStringSet, one should be able to provide a bigwig track (imported as RleList) to sign eigenvectors when annotating compartments with get compartments function, eg a coverage track of the GC content.