pyproject.toml

[project]
name = "novotyper"
version = "0.1.0"
description = "Add your description here"
authors = [
    { name = "jsquaredosquared", email = "jeffreyjamesochiengodongo@gmail.com" }
]
dependencies = [
    "marimo>=0.8.20",
    "pandas>=2.2.3",
    "polars[all]>=1.8.2",
    "altair[all]>=5.4.1",
    "bioframe>=0.7.2",
    "numpy<2",
    "pyranges>=0.1.2",
    "cyclopts>=2.9.9",
    "pytest>=8.3.3",
    "ipykernel>=6.29.5",
    "coconut>=3.1.2",
    "nbformat>=5.10.4",
    "snakemake>=8.20.5",
    "mystmd>=1.3.11",
]
readme = "README.md"
requires-python = ">= 3.8"

[build-system]
requires = ["hatchling"]
build-backend = "hatchling.build"

[tool.rye]
managed = true
dev-dependencies = []

[tool.hatch.metadata]
allow-direct-references = true

[tool.hatch.build.targets.wheel]
packages = ["src/novotyper"]

[tool.pytest.ini_options]
addopts = [
    "--import-mode=importlib",
]

[project.scripts]
novotyper = 'novotyper:main'