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Surfaces what is blocked on whom (importer PR for mmseqs2 review,
CTS admin registration for kofamscan and bakta) so we don't lose
track of in-flight work.
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
Copy file name to clipboardExpand all lines: README.md
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| Tool | Repo | Image | Refdata | Status |
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|------|------|-------|---------|--------|
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| mmseqs2 |[cdm_mmseqs2](https://github.com/kbaseincubator/cdm_mmseqs2)|`0.1.0`| no | Live (importer PR #35pending merge in cdm-spark-events-importers) |
| modelseedpy | — | — | none | Planned (ask Chris Henry for container) |
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External / not built via this skeleton:
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-**checkm2** — `ghcr.io/kbasetest/cdm_checkm2:0.3.0` (Gavin's reference example, predates this skeleton)
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-**InterProScan** — Chris Neely's container (deployed to dev only, currently broken)
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---
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## Open PRs and Pending Handoffs
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Things waiting on someone else. Update as items move.
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### Open PRs
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| PR | Tool | Description | Owner / waiting on |
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|----|------|-------------|-------------------|
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|[kbase/cdm-spark-events-importers#35](https://github.com/kbase/cdm-spark-events-importers/pull/35)| mmseqs2 | First importer for the cluster TSV output. CI green, ready to merge. | Gavin (review + merge + redeploy event processor) |
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### Pending CTS admin (Gavin) registrations
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| Tool | What's needed | Staged at |
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|------|---------------|-----------|
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| kofamscan | Move bundle to `cts-refdata`, register refdata, register image with refdata link |`s3://cts/io/jplfaria/refdata_staging/kofam/kofam_refdata.tar.gz` (~1.5GB), image `ghcr.io/kbaseincubator/cdm_kofamscan:0.1.0@sha256:d6b20eccf4c6bf1b095e530844a8b04dbae5fca85daf0c9b2bdffb0cf10a9a42`|
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| bakta | Move bundle to `cts-refdata`, register refdata, register image with refdata link |`s3://cts/io/jplfaria/refdata_staging/bakta/bakta_db.tar.gz` (~30GB), image `ghcr.io/kbaseincubator/cdm_bakta:0.1.0@sha256:6de4c51cadd75bc6a1d9f6e6b05716ecfdcfa63510b82459477ff757200d8d06`|
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