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Aba lvl atlases#114

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amrka wants to merge 5 commits intokhanlab:mainfrom
amrka:aba_lvl_atlases
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Aba lvl atlases#114
amrka wants to merge 5 commits intokhanlab:mainfrom
amrka:aba_lvl_atlases

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@amrka
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@amrka amrka commented Mar 2, 2026

Adding three new ABA atlases:

  • coarse: includes 12 bilateral major structures
  • mid: contains 51 bilateral structure
  • fine: contains 316 bilateral structure

@akhanf
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akhanf commented Mar 4, 2026

Thanks Amr -- I will add these to zenodo instead of the repo -- ok if I make a zenodo release and include you there? If you can please pass along your orcid id so I can add you as an author there..

@amrka
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amrka commented Mar 5, 2026

sure. here is the number: https://orcid.org/0000-0002-9370-4917

@akhanf
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akhanf commented Mar 17, 2026

Alright I've got the atlases in zenodo now, and workflow updated.
https://zenodo.org/records/18906782

running a quick test to see how things go but should be good..
note, I've kept all of the previous ones too, and the default is to use all -- maybe we can change this to just: all, coarse, mid, fine -- but would need to change the workflow/cli a bit to allow this, as right now can't assume a default since it won't work if the user changes the atlas (e.g. to marmoset)..

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