Refactor scijava integration

Author: dietzc

org.knime.scijava.commands/.classpath

@@ -3,5 +3,6 @@
 	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8"/>
 	<classpathentry kind="con" path="org.eclipse.pde.core.requiredPlugins"/>
 	<classpathentry excluding="org/knime/knip/scijava/commands/adapter/basic/ImgInputAdapter.java|org/knime/knip/scijava/commands/adapter/basic/ImgOutputAdapter.java|org/knime/knip/scijava/commands/adapter/basic/ImgPlusInputAdapter.java|org/knime/knip/scijava/commands/adapter/basic/ImgPlusOutputAdapter.java" kind="src" path="src"/>
+	<classpathentry exported="true" kind="lib" path="lib/tools.jar"/>
 	<classpathentry kind="output" path="bin"/>
 </classpath>

org.knime.scijava.commands/META-INF/MANIFEST.MF

@@ -16,10 +16,16 @@ Require-Bundle: org.eclipse.core.runtime;bundle-version="3.11.0",
  scijava-plugins-text-plain;bundle-version="0.1.2",
  scijava-ui-awt;bundle-version="0.1.4",
  scijava-ui-swing;bundle-version="0.8.0",
- org.knime.scijava.core;bundle-version="0.2.1"
+ org.knime.scijava.core;bundle-version="0.2.1",
+ com.google.guava;bundle-version="19.0.0",
+ scripting-jython;bundle-version="0.3.0",
+ jython-shaded;bundle-version="2.5.3",
+ scripting-java;bundle-version="0.4.0",
+ scripting-clojure;bundle-version="0.1.4"
 Bundle-RequiredExecutionEnvironment: JavaSE-1.8
 Bundle-ActivationPolicy: lazy
-Bundle-ClassPath: scijava_commands.jar
+Bundle-ClassPath: scijava_commands.jar,
+ lib/tools.jar
 Export-Package: org.knime.scijava.commands,
  org.knime.scijava.commands.adapter,
  org.knime.scijava.commands.adapter.basic,

org.knime.scijava.commands/build.properties

@@ -6,7 +6,8 @@ bin.includes = plugin.xml,\
                lib/,\
                icons/,\
                lib/mvn/scijava-common-2.1.0.jar,\
-               scijava_commands.jar
+               scijava_commands.jar,\
+               lib/tools.jar
 output.knipknime.jar = bin/
 src.includes = lib/src/,\
                src/

org.knime.scijava.commands/lib/tools.jar

@@ -1,4 +1,16 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <?eclipse version="3.0"?>
 <plugin>
+   <extension
+         point="org.knime.workbench.repository.nodes">
+   </extension>
+   <extension
+         point="org.knime.workbench.repository.nodesets">
+      <nodeset
+            default-category-icon="org.knime.scijava.commands.nodes.SciJavaNodeSetFactory"
+            deprecated="false"
+            factory-class="org.knime.scijava.commands.nodes.SciJavaNodeSetFactory"
+            id="SciJavaNodeSet (TMP)">
+      </nodeset>
+   </extension>
 </plugin>

org.knime.scijava.commands/plugin.xml

@@ -0,0 +1,6 @@
+# @double value
+# @OUTPUT double greeting
+
+greeting = value
+
+print greeting

org.knime.scijava.commands/scripts/myjython.py

@@ -0,0 +1,4 @@
+; @Integer(label="My integer",description="Input integer.",value=17) test-int
+; @OUTPUT Integer output-int
+
+(def output-int test-int)

org.knime.scijava.commands/scripts/test.clj

@@ -0,0 +1,7 @@
+package org.knime.scijava.commands;
+
+import org.knime.core.data.DataCell;
+
+public interface CellOutput {
+    void push(final DataCell[] cells);
+}