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2.**`.gitignore` patterns** — loaded from the project root
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3.**`ignore` in config** — extra patterns merged with defaults
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Database migration folders (`migrations`, `pb_migrations`, `db/migrate`, `alembic`, and `flyway`) are indexed unless your `.gitignore` or config excludes them. Older starter configs explicitly ignored migration folders; remove those entries from the config's `ignore` list and run `ctxt init .` to include them in a rebuilt index.
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Root `.gitignore` rules support ordered negation (`!path`), rooted patterns,
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directory-only patterns, and `**` globs. Negation can undo earlier Git rules,
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but cannot re-include an excluded parent directory or override built-in/config
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