ubuntu

#FROM ubuntu:latest
#FROM ubuntu:eoan
FROM ubuntu:bionic

RUN apt-get -q update -y && apt-get -qq install -y \
sudo \
libopenmpi-dev openmpi-bin \
libboost-all-dev \
liblapack-dev liblapacke-dev \
python2.7 python-pip git \
wget curl lcov doxygen \
ccache texlive-latex-base texlive-fonts-recommended texlive-latex-recommended texlive-font-utils \
g++ gfortran bc \
tar \
libmetis-dev \
libhdf5-openmpi-dev \
libnetcdf-dev \
libexodusii-dev \
libexodusii5 \
libnemesis3 \
libunittest++-dev \
libtrilinos-zoltan-dev \
libboost-all-dev 

RUN groupadd -r portage
RUN useradd -r -m -g portage -G sudo portage
RUN echo '%sudo ALL=(ALL) NOPASSWD:ALL' >> /etc/sudoers

USER portage
ENV PATH=/usr/lib/ccache:${PATH}
WORKDIR /home/portage
RUN pip install --user codecov coverxygen

# Build cmake 3.13.4
RUN wget https://github.com/Kitware/CMake/releases/download/v3.13.4/cmake-3.13.4.tar.gz && \ 
tar zxf cmake-3.13.4.tar.gz
WORKDIR cmake-3.13.4 
RUN sudo ./bootstrap 
RUN sudo make -j2 && sudo make install
WORKDIR ..

# Build MSTK and Jali
RUN wget https://github.com/MeshToolkit/mstk/archive/3.3.4.tar.gz && \
     tar xzf 3.3.4.tar.gz
WORKDIR MSTK-3.3.4
RUN mkdir build
WORKDIR build
ENV MSTK_DIR /home/portage/MSTK-3.3.4/install 
RUN  cmake -D CMAKE_BUILD_TYPE=Release \
     -D CMAKE_PREFIX_PATH="/usr/include/trilinos" \
     -D CMAKE_INSTALL_PREFIX=$MSTK_DIR \
     -D ENABLE_PARALLEL=ON \
     -D ENABLE_METIS=yes \
     -D ENABLE_ZOLTAN=yes \
     -D ENABLE_ExodusII=yes \
     -D ENABLE_Tests=yes ..
RUN make VERBOSE=1 -j2 && make test
RUN make install
RUN ls $MSTK_DIR

WORKDIR ../..
RUN git clone https://github.com/lanl/jali.git
WORKDIR jali
RUN git checkout 1.1.3
RUN mkdir build
WORKDIR build
ENV JALI_DIR /home/portage/jali/install
RUN cmake -D CMAKE_PREFIX_PATH="$MSTK_DIR;/usr/include/trilinos" \
     -D CMAKE_INSTALL_PREFIX=$JALI_DIR \
     -D CMAKE_BUILD_TYPE=Release \
     -D ENABLE_MSTK_Mesh:BOOL=TRUE \
     -D ENABLE_Tests=yes .. 
RUN make VERBOSE=1 -j2 && make test
RUN make install
RUN ls $JALI_DIR