coverage.yml

name: coverage

on:
  push:
    branches: [ develop , main]
    paths:
      - src/python/**
  pull_request:
    branches: [ develop , main]
    paths:
      - src/python/**

jobs:
  report:
    runs-on: Ubuntu-20.04
    strategy:
      matrix:
        python-version: [3.8]
    steps:
    - uses: actions/checkout@v2
    - name: Set up Python ${{ matrix.python-version }}
      uses: actions/setup-python@v2
      with:
        python-version: ${{ matrix.python-version }}
        
    - name: Install packages
      run: |
        pip install pip==21.3.1 wheel==0.37.1 setuptools==60.1.0
        pip install -r  src/python/requirements.txt
        pip install pytest==6.2.4 pytest-cov==3.0.0 igraph==0.10.4
        pip install ./src/python/
        pip list

    - name: Test VIMuRe
      run: |
        pytest --cov=vimure --cov-report=xml --doctest-modules --pyargs vimure 
        
    - name: "Upload coverage to Codecov"
      uses: codecov/codecov-action@v2