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Minor refinement in filefix option description
Refine output options and add merge command
Refine all option tables, and add filter
Add output prefix/suffix and compression
Add citation and gz doc
Update doc for new version
Update wiki to new global command structure.
Restructure analyze and examine modules.
Update CLI Formatter.
Refine and fix edpl and lwr commands.
Add LWR histogram command
Refinde EDPL command doc
Add EDPL command