This repository is for hosting the code for the LIDB n36 project lead by AE Jaffe.
If you have any questions about the files in this directory contact AE Jaffe [email protected].
Scripts use derfinder and are organized in the following way:
- derCoverageInfo: contains scripts for processing data from BAM files, filtering and creating Rdata files.
- fullCoverage: similar as derCoverageInfo but without filtering data.
- derAnalysis: has scripts for creating the models, running the derfinder analysis one chromosome at a time, merging the results, and creating a html report.