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Update phavu.Weller_VanderSchoor_2019.yml
Added phenotype synopsis
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Phaseolus/vulgaris/studies/phavu.Weller_VanderSchoor_2019.yml

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@@ -6,19 +6,34 @@ gene_symbol_long: Phytochrome A
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gene_model_pub_name: Phvul.001G221100
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gene_model_full_id: phavu.G19833.gnm1.ann1.Phvul.001G221100
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confidence: 3
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curators:
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-Amy Pollpeter
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curators: -Amy Pollpeter
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comments:
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- Wild accessions - G12873 from mesoamerica - indeterminate growth habit, photoperiod sensitive (requires short days).
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- Domesticated accession - cv. Midas - from Andean - determinate growth habit, photoperiod insensitive (grows and flowers in long days)
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- These traits previously associated with 2 loci on Chromosome 1. Fin - Indeterminate growth, fin - determinate growth; Ppd - photoperiod sensitive, ppd - photoperiod insensitive.
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- Wild accessions - G12873 from mesoamerica - indeterminate growth habit,
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photoperiod sensitive (requires short days).
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- Domesticated accession - cv. Midas - from Andean - determinate growth habit,
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photoperiod insensitive (grows and flowers in long days)
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- These traits previously associated with 2 loci on Chromosome 1. Fin -
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Indeterminate growth, fin - determinate growth; Ppd - photoperiod sensitive,
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ppd - photoperiod insensitive.
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- Fin previously associated with TFL1y gene.
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- Identified a deleterious PHYA3 sequence in ppd (photoperiod insensitive) plants in several accessions of Andean origin.
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- 2nd deleterious allel present in photoperiod insensitive ppd plants in some Mesoamerican accessions.
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- Identified a deleterious PHYA3 sequence in ppd (photoperiod insensitive)
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plants in several accessions of Andean origin.
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- 2nd deleterious allel present in photoperiod insensitive ppd plants in some
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Mesoamerican accessions.
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- PHYA3 and Ppd have been associated to each other in other legumes (soybean).
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phenotype_synopsis:
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- Loss of function mutations in the PHYA3 gene result in photoperiod
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insensitive plants that show early flowering behavior without the short day
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requirement of wild accessions.
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- Two different mutations appear to have resulted in this same phenotype in
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two different lines of common bean. One in the mesoamerican lineage and one
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in the Andean lineage.
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- There is evidence for an epistatic interaction between the Ppd locus
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associated with PHYA3 and the Fin locus associated with
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indeterminate/determinate growth habits.
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references:
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- citation: Weller, Vander Schoor et al., 2019
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doi: 10.1093/jxb/ery455
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pmid: 31222352
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