setup.py

#!/usr/bin/env python

# setup for FisherExact library packages

from __future__ import absolute_import
from __future__ import print_function
import os
import sys

try:
    from setuptools import find_packages
except ImportError:
    import ez_setup

    ez_setup.use_setuptools()
    from setuptools import find_packages

from numpy.distutils.core import Extension as Ext
from numpy.distutils.core import setup

__version__ = "1.4"
__project__ = "FisherExact"
__author__ = "Emmanuel Noutahi"

sys.path.insert(0, os.path.realpath(os.path.join(os.path.dirname(__file__), "python")))


def configuration(top_path=""):
    fexact_sources = [
        "FisherExact/statlib/fexact.pyf",
        "FisherExact/statlib/FEXACT.F90",
        "FisherExact/statlib/prterr.f",
    ]

    fexact = Ext(
        name="FisherExact.statlib.fexact",
        sources=[os.path.join(top_path, x) for x in fexact_sources],
    )
    asa159 = Ext(
        name="FisherExact.statlib.asa159",
        sources=[os.path.join(top_path, "FisherExact/statlib", "asa159.f90")],
    )
    asa205 = Ext(
        name="FisherExact.statlib.asa205",
        sources=[os.path.join(top_path, "FisherExact/statlib", "asa205.f90")],
    )
    return [fexact, asa205, asa159]


def setup_package():
    if os.path.exists("README.md"):
        README = open("README.md").read()
    else:
        README = ""  # a placeholder, readme is generated on release
    print("\nVersion : %s\n" % __version__)

    fortran_extnsion = configuration()

    setup(
        name=__project__,
        version=__version__,
        maintainer=__author__,
        description="Fishe's Exact test for mxn contingency table",
        url="https://github.com/maclandrol/FisherExact",
        download_url="https://github.com/maclandrol/FisherExact/archive/%s.tar.gz"
        % __version__,
        author=__author__,
        author_email="fmr.noutahi@umontreal.ca",
        scripts=["bin/fexact"],
        packages=find_packages(),
        entry_points={"console_scripts": []},
        keywords="statistic fisher independence test",
        long_description=(README + "\n"),
        license="MIT",
        classifiers=[
            "Development Status :: 4 - Beta",
            "Environment :: Console",
            "Natural Language :: English",
            "Intended Audience :: Developers",
            "Intended Audience :: Science/Research",
            "License :: OSI Approved :: GNU General Public License (GPL)",
            "Operating System :: Microsoft :: Windows",
            "Operating System :: POSIX",
            "Operating System :: Unix",
            "Operating System :: MacOS",
            "Programming Language :: Python",
            "Programming Language :: Python :: 2",
            "Programming Language :: Python :: 2.7",
            "Programming Language :: Python :: 3",
            "Programming Language :: Python :: 3.4",
            "Programming Language :: Python :: 3.5",
            "Programming Language :: Python :: 3.6",
        ],
        setup_requires=["numpy"],
        install_requires=[
            "future>=0.15.0",
            "numpy>=1.8.0",
            "scipy>=0.16.0",
        ],
        ext_modules=fortran_extnsion,
    )


if __name__ == "__main__":
    setup_package()