@@ -4,7 +4,7 @@ ImgX-DiffSeg is a Jax-based deep learning toolkit using Flax for biomedical imag
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This repository includes the implementation of the following work
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- - [ A Recycling Training Strategy for Medical Image Segmentation with Diffusion Denoising Models] ( https://arxiv .org/abs/2308.16355 )
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+ - [ A Recycling Training Strategy for Medical Image Segmentation with Diffusion Denoising Models] ( https://melba-journal .org/2023:016 )
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- [ Importance of Aligning Training Strategy with Evaluation for Diffusion Models in 3D Multiclass Segmentation] ( https://arxiv.org/abs/2303.06040 )
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:construction : ** The codebase is still under active development for more enhancements and
@@ -29,7 +29,7 @@ applications.** :construction:
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features or [ reach out] ( https://orcid.org/0000-0002-1184-7421 ) for collaborations. :mailbox :
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<div >
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- <img src =" images/diffusion_training_strategy_diagram .png " width =" 600 " alt =" diffusion_training_strategy_diagram " ></img >
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+ <img src =" images/melba_graphic_abstract .png " width =" 600 " alt =" graphic_abstract " ></img >
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</div >
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## Features
@@ -54,7 +54,7 @@ See the [readme](imgx_datasets/README.md) for further details.
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prediction ([ x0-parameterization] ( https://arxiv.org/abs/2102.09672 ) ).
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- [ Importance sampling] ( https://arxiv.org/abs/2102.09672 ) for timestep.
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- Recycling training strategies, including [ xt-recycling] ( https://arxiv.org/abs/2303.06040 ) and
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- [ xT-recycling] ( https://arxiv .org/abs/2308.16355 ) .
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+ [ xT-recycling] ( https://melba-journal .org/2023:016 ) .
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- Self-conditioning training strategies, including
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[ Chen et al. 2022] ( https://arxiv.org/abs/2208.04202 ) and
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[ Watson et al. 2023.] ( https://www.nature.com/articles/s41586-023-06415-8 ) .
@@ -311,13 +311,17 @@ London and the University of Manchester, and Cloud TPUs from Google's TPU Resear
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If you find the code base and method useful in your research, please cite the relevant paper:
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``` bibtex
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- @article{fu2023recycling,
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- title={A Recycling Training Strategy for Medical Image Segmentation with Diffusion Denoising Models},
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- author={Fu, Yunguan and Li, Yiwen and Saeed, Shaheer U and Clarkson, Matthew J and Hu, Yipeng},
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- journal={arXiv preprint arXiv:2308.16355},
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- year={2023},
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- doi={10.48550/arXiv.2308.16355},
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- url={https://arxiv.org/abs/2308.16355},
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+ @article{melba:2023:016:fu,
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+ title = "A Recycling Training Strategy for Medical Image Segmentation with Diffusion Denoising Models",
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+ author = "Fu, Yunguan and Li, Yiwen and Saeed, Shaheer U. and Clarkson, Matthew J. and Hu, Yipeng",
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+ journal = "Machine Learning for Biomedical Imaging",
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+ volume = "2",
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+ issue = "Special Issue for Generative Models",
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+ year = "2023",
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+ pages = "507--546",
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+ issn = "2766-905X",
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+ doi = "https://doi.org/10.59275/j.melba.2023-fbe4",
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+ url = "https://melba-journal.org/2023:016"
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}
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@article{fu2023importance,
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