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family_annotation.yaml
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Bel/Pao: [GAG_bel, GAG_suzu, GAG_sinbad, GAG_pao, GAG_tas, AP_bel, AP_suzu, AP_sinbad,
AP_pao, AP_tas, RT_bel, RT_suzu, RT_sinbad, RT_pao, RT_tas, RNaseH_bel, RNaseH_suzu,
RNaseH_sinbad, RNaseH_pao, RNaseH_tas, INT_bel, INT_suzu, INT_sinbad, INT_pao, INT_tas,
ENV_tas]
Caulimoviridae: [GAGCOAT_caulimovirus, GAGCOAT_badnavirus, GAGCOAT_cavemovirus, GAGCOAT_soymovirus,
AP_caulimovirus, AP_badnavirus, AP_cavemovirus, AP_soymovirus, AP_caulimoviridae_dom2,
RT_caulimovirus, RT_badnavirus, RT_cavemovirus, RT_soymovirus, RNaseH_caulimovirus,
RNaseH_badnavirus, RNaseH_cavemovirus, RNaseH_soymovirus]
Retroviridae: [GAG_alpharetroviridae, GAG_betaretroviridae, GAG_gammaretroviridae,
GAG_deltaretroviridae, GAG_lentiviridae, GAG_spumaretroviridae, GAG_epsilonretroviridae,
AP_alpharetroviridae, AP_betaretroviridae, AP_gammaretroviridae, AP_deltaretroviridae,
AP_lentiviridae, AP_spumaretroviridae, AP_epsilonretroviridae, RT_alpharetroviridae,
RT_betaretroviridae, RT_gammaretroviridae, RT_deltaretroviridae, RT_lentiviridae,
RT_spumaretroviridae, RT_epsilonretroviridae, RNaseH_alpharetroviridae, RNaseH_betaretroviridae,
RNaseH_gammaretroviridae, RNaseH_deltaretroviridae, RNaseH_lentiviridae, RNaseH_spumaretroviridae,
RNaseH_epsilonretroviridae, INT_alpharetroviridae, INT_betaretroviridae, INT_gammaretroviridae,
INT_deltaretroviridae, INT_lentiviridae, INT_spumaretroviridae, INT_epsilonretroviridae,
ENV_retroviridae, ENV_alpharetroviridae, ENV_B-type_betaretroviridae, ENV_D-type_betaretroviridae,
ENV_gammaretroviridae, ENV_deltaretroviridae, ENV_lentiviridae, ENV_spumaretroviridae]
Ty1/Copia: [GAG_1731, GAG_pCretro, GAG_hydra, GAG_copia (hemivirus), GAG_tork, GAG_retrofit,
GAG_oryco, GAG_sire, GAG_pseudovirus, GAG_codi-I, GAG_codi-II, GAG_codi-c, GAG_codi-d,
AP_1731, AP_pCretro, AP_hydra, AP_copia (hemivirus), AP_tork, AP_retrofit, AP_oryco,
AP_sire, AP_pseudovirus, AP_codi-I, AP_codi-II, AP_codi-c, AP_codi-d, RT_1731, RT_pCretro,
RT_hydra, RT_copia (hemivirus), RT_tork, RT_retrofit, RT_oryco, RT_sire, RT_pseudovirus,
RT_codi-I, RT_codi-II, RT_codi-c, RT_codi-d, RNaseH_1731, RNaseH_pCretro, RNaseH_hydra,
RNaseH_copia (hemivirus), RNaseH_tork, RNaseH_retrofit, RNaseH_oryco, RNaseH_sire,
RNaseH_pseudovirus, RNaseH_codi-I, RNaseH_codi-II, RNaseH_codi-c, RNaseH_codi-d,
INT_1731, INT_pCretro, INT_hydra, INT_copia (hemivirus), INT_tork, INT_retrofit,
INT_oryco, INT_sire, INT_pseudovirus, INT_codi-I, INT_codi-II, INT_codi-c, INT_codi-d,
ENV_sire]
Ty3/Gypsy: [GAG_412/mdg1, GAG_athila, GAG_cer2-3, GAG_maggy, GAG_pyggy, GAG_pyret,
GAG_crm, GAG_galadriel, GAG_del, GAG_reina, GAG_TF, GAG_17.6, GAG_gypsy, GAG_micropia/mdg3,
GAG_osvaldo, GAG_tat, GAG_csrn1, GAG_gmr1, GAG_v-clade, GAG_a-clade, GAG_b-clade,
AP_412/mdg1, AP_athila, AP_cer2-3, AP_maggy, AP_pyggy, AP_pyret, AP_crm, AP_galadriel,
AP_del, AP_reina, AP_TF, AP_micropia/mdg3, AP_osvaldo, AP_tat, AP_csrn1, AP_gmr1,
AP_v-clade, AP_a-clade, AP_b-clade, AP_17.6, AP_gypsy, RT_412/mdg1, RT_athila, RT_cer2-3,
RT_maggy, RT_pyggy, RT_pyret, RT_crm, RT_galadriel, RT_del, RT_reina, RT_TF, RT_micropia/mdg3,
RT_osvaldo, RT_tat, RT_csrn1, RT_gmr1, RT_v-clade, RT_a-clade, RT_b-clade, RT_17.6,
RT_gypsy, RNaseH_412/mdg1, RNaseH_athila, RNaseH_cer2-3, RNaseH_maggy, RNaseH_pyggy,
RNaseH_pyret, RNaseH_crm, RNaseH_galadriel, RNaseH_del, RNaseH_reina, RNaseH_TF,
RNaseH_micropia/mdg3, RNaseH_osvaldo, RNaseH_tat, RNaseH_csrn1, RNaseH_gmr1, RNaseH_v-clade,
RNaseH_a-clade, RNaseH_b-clade, RNaseH_17.6, RNaseH_gypsy, INT_412/mdg1, INT_athila,
INT_cer2-3, INT_maggy, INT_pyggy, INT_pyret, INT_crm, INT_galadriel, INT_del, INT_reina,
INT_TF, INT_micropia/mdg3, INT_osvaldo, INT_tat, INT_csrn1, INT_gmr1, INT_v-clade,
INT_a-clade, INT_b-clade, INT_17.6, INT_gypsy, ENV_athila, ENV_errantiviridae]