From 112a4d237a28039eaa683d51910629ecb8f68b66 Mon Sep 17 00:00:00 2001 From: Michel Oleynik Date: Tue, 11 Jul 2017 11:52:00 +0200 Subject: [PATCH] Deactivates gene expansion (refs #57) It has produced lots of false positives due to partial matches in the gene description. Better handling of synonyms (refs #96) and matches in fields with different analyzers (refs #97) could help. --- src/main/java/at/medunigraz/imi/bst/trec/RunnerDemo.java | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/src/main/java/at/medunigraz/imi/bst/trec/RunnerDemo.java b/src/main/java/at/medunigraz/imi/bst/trec/RunnerDemo.java index 13a99db..2771b36 100644 --- a/src/main/java/at/medunigraz/imi/bst/trec/RunnerDemo.java +++ b/src/main/java/at/medunigraz/imi/bst/trec/RunnerDemo.java @@ -31,8 +31,8 @@ public static void main(String[] args) { final File pmTemplate = new File(RunnerDemo.class.getResource("/templates/must-match-disease.json").getFile()); Gene.Field[] expandTo = { Gene.Field.SYMBOL, Gene.Field.DESCRIPTION }; - Query pmDecorator = new WordRemovalQueryDecorator(new GeneExpanderQueryDecorator(expandTo, - new TemplateQueryDecorator(pmTemplate, new ElasticSearchQuery("trec")))); + Query pmDecorator = new WordRemovalQueryDecorator( + new TemplateQueryDecorator(pmTemplate, new ElasticSearchQuery("trec"))); for (String id : pmRuns) { runExperiment(id, pmDecorator);